==> Synchronizing chroot copy [/home/leming/armv7/root] -> [leming]...done ==> Making package: biodiff 1.2.1-1 (Sun Apr 21 08:25:27 2024) ==> Retrieving sources... -> Cloning biodiff-1.2.1 git repo... Cloning into bare repository '/home/leming/work/biodiff/biodiff-1.2.1'... -> Cloning biodiff-WFA2-lib git repo... Cloning into bare repository '/home/leming/work/biodiff/biodiff-WFA2-lib'... ==> WARNING: Skipping verification of source file PGP signatures. ==> Validating source files with sha256sums... biodiff-1.2.1 ... Skipped biodiff-WFA2-lib ... Skipped ==> Making package: biodiff 1.2.1-1 (Sun Apr 21 08:25:51 2024) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Installing missing dependencies... [?25l:: There are 2 providers available for cargo: :: Repository extra 1) rust 2) rustup Enter a number (default=1): resolving dependencies... looking for conflicting packages... Packages (13) cppdap-1.58.0-1 hicolor-icon-theme-0.17-3 jsoncpp-1.9.5-2 libedit-20230828_3.1-1 libuv-1.48.0-2 llvm-libs-17.0.6-2 perl-error-0.17029-5 perl-mailtools-2.21-7 perl-timedate-2.33-5 rhash-1.4.4-1 cmake-3.29.2-1 git-2.44.0-1 rust-1:1.77.2-1 Total Download Size: 97.59 MiB Total Installed Size: 434.85 MiB :: Proceed with installation? [Y/n] :: Retrieving packages... rust-1:1.77.2-1-armv7h downloading... llvm-libs-17.0.6-2-armv7h downloading... cmake-3.29.2-1-armv7h downloading... git-2.44.0-1-armv7h downloading... cppdap-1.58.0-1-armv7h downloading... libuv-1.48.0-2-armv7h downloading... rhash-1.4.4-1-armv7h downloading... jsoncpp-1.9.5-2-armv7h downloading... libedit-20230828_3.1-1-armv7h downloading... perl-mailtools-2.21-7-any downloading... perl-timedate-2.33-5-any downloading... perl-error-0.17029-5-any downloading... hicolor-icon-theme-0.17-3-any downloading... checking keyring... checking package integrity... loading package files... checking for file conflicts... checking available disk space... :: Processing package changes... installing libedit... installing llvm-libs... installing rust... Optional dependencies for rust gdb: rust-gdb script lldb: rust-lldb script installing hicolor-icon-theme... installing jsoncpp... Optional dependencies for jsoncpp jsoncpp-doc: documentation installing libuv... installing rhash... installing cppdap... installing cmake... Optional dependencies for cmake make: for unix Makefile generator [installed] ninja: for ninja generator qt6-base: cmake-gui installing perl-error... installing perl-timedate... installing perl-mailtools... installing git... Optional dependencies for git tk: gitk and git gui openssh: ssh transport and crypto perl-libwww: git svn perl-term-readkey: git svn and interactive.singlekey setting perl-io-socket-ssl: git send-email TLS support perl-authen-sasl: git send-email TLS support perl-mediawiki-api: git mediawiki support perl-datetime-format-iso8601: git mediawiki support perl-lwp-protocol-https: git mediawiki https support perl-cgi: gitweb (web interface) support python: git svn & git p4 subversion: git svn org.freedesktop.secrets: keyring credential helper libsecret: libsecret credential helper [installed] :: Running post-transaction hooks... (1/1) Warn about old perl modules [?25h==> Retrieving sources... ==> WARNING: Skipping all source file integrity checks. ==> Extracting sources... -> Creating working copy of biodiff-1.2.1 git repo... Cloning into 'biodiff-1.2.1'... done. Switched to a new branch 'makepkg' -> Creating working copy of biodiff-WFA2-lib git repo... Cloning into 'biodiff-WFA2-lib'... done. ==> Starting prepare()... Submodule 'biodiff-wfa2-sys/WFA2-lib' (https://github.com/smarco/WFA2-lib) registered for path 'biodiff-wfa2-sys/WFA2-lib' Cloning into '/build/biodiff/src/biodiff-1.2.1/biodiff-wfa2-sys/WFA2-lib'... done. Submodule path 'biodiff-wfa2-sys/WFA2-lib': checked out 'cf3eb92dd0aa9bf067d5488a606d8c91173e74eb' Updating crates.io index Fetch [==============> ] 47 complete; 4 pending Fetch [=================> ] 51 complete; 73 pending Fetch [=================> ] 112 complete; 12 pending Fetch [====================> ] 124 complete; 44 pending Fetch [====================> ] 166 complete; 2 pending Fetch [=======================> ] 168 complete; 14 pending Fetch [==========================> ] 182 complete; 6 pending Fetch [==========================> ] 186 complete; 2 pending Fetch [=============================> ] 190 complete; 1 pending Fetch [=============================> ] 191 complete; 2 pending Downloading 1 crate Downloading 2 crates Downloading 3 crates Downloading 4 crates Downloading 5 crates Downloading 6 crates Downloading 7 crates Downloading 8 crates Downloading 9 crates Downloading 10 crates Downloading 11 crates Downloading 12 crates Downloading 13 crates Downloading 14 crates 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Downloading 171 crates, remaining bytes: 7.0 MB Downloaded anyhow v1.0.82 Downloading 170 crates, remaining bytes: 6.2 MB Downloaded safe_arch v0.7.1 Downloading 169 crates, remaining bytes: 5.6 MB Downloaded itertools v0.11.0 Downloading 168 crates, remaining bytes: 5.0 MB Downloaded time v0.3.35 Downloading 167 crates, remaining bytes: 4.5 MB Downloaded ndarray v0.15.6 Downloading 166 crates, remaining bytes: 3.9 MB Downloaded nalgebra v0.29.0 Downloading 165 crates, remaining bytes: 3.6 MB Downloaded rustc_version v0.1.7 Downloading 164 crates, remaining bytes: 3.3 MB Downloaded itertools-num v0.1.3 Downloading 163 crates, remaining bytes: 3.1 MB Downloaded bio-types v1.0.1 Downloading 162 crates, remaining bytes: 2.8 MB Downloaded editdistancek v1.0.2 Downloading 161 crates, remaining bytes: 2.6 MB Downloaded regex v1.10.4 Downloading 160 crates, remaining bytes: 2.4 MB Downloaded syn v2.0.58 Downloading 159 crates, remaining bytes: 2.3 MB Downloaded semver v0.1.20 Downloading 158 crates, remaining bytes: 2.1 MB Downloaded csv v1.3.0 Downloading 157 crates, extracting csv ... Downloading 157 crates, remaining bytes: 2.0 MB Downloaded triple_accel v0.4.0 Downloading 156 crates, remaining bytes: 1.9 MB Downloaded regex-syntax v0.8.3 Downloading 155 crates, remaining bytes: 1.8 MB Downloaded rustix v0.38.32 Downloading 154 crates, remaining bytes: 1.7 MB Downloaded rayon v1.10.0 Downloading 153 crates, remaining bytes: 1.7 MB Downloaded rustfft v6.2.0 Downloading 152 crates, remaining bytes: 1.6 MB Downloaded newtype_derive v0.1.6 Downloading 151 crates, remaining bytes: 1.5 MB Downloaded rawpointer v0.2.1 Downloading 150 crates, remaining bytes: 1.5 MB Downloaded aho-corasick v1.1.3 Downloading 149 crates, remaining bytes: 1.4 MB Downloaded hashbrown v0.14.3 Downloading 148 crates, remaining bytes: 1.4 MB Downloaded winnow v0.6.6 Downloading 147 crates, remaining bytes: 1.3 MB Downloaded petgraph v0.6.4 Downloading 146 crates, remaining bytes: 1.2 MB Downloaded syn v1.0.109 Downloading 145 crates, remaining bytes: 1.2 MB Downloaded cursive_core v0.3.7 Downloading 144 crates, remaining bytes: 1.1 MB Downloaded serde_json v1.0.115 Downloading 143 crates, remaining bytes: 1.1 MB Downloaded regex-automata v0.4.6 Downloading 142 crates, extracting regex-automata ... Downloading 142 crates, remaining bytes: 977.0 KB Downloaded crossbeam-channel v0.5.12 Downloading 141 crates, remaining bytes: 956.5 KB Downloaded darling_core v0.20.8 Downloading 140 crates, remaining bytes: 923.8 KB Downloaded unicode-segmentation v1.11.0 Downloading 139 crates, remaining bytes: 891.1 KB Downloaded libm v0.2.8 Downloading 138 crates, remaining bytes: 842.0 KB Downloaded xi-unicode v0.3.0 Downloading 137 crates, remaining bytes: 809.2 KB Downloaded snapbox v0.5.9 Downloading 136 crates, remaining bytes: 772.2 KB Downloaded libc v0.2.153 Downloading 135 crates, extracting libc ... Downloading 135 crates, remaining bytes: 719.0 KB Downloaded indexmap v2.2.6 Downloading 134 crates, remaining bytes: 719.0 KB Downloaded memchr v2.7.2 Downloading 133 crates, remaining bytes: 702.6 KB Downloaded trycmd v0.15.1 Downloading 132 crates, remaining bytes: 686.2 KB Downloaded matrixmultiply v0.3.8 Downloading 131 crates, remaining bytes: 669.9 KB Downloaded rand_distr v0.4.3 Downloading 130 crates, remaining bytes: 650.1 KB Downloaded bytemuck v1.15.0 Downloading 129 crates, remaining bytes: 633.7 KB Downloaded wide v0.7.15 Downloading 128 crates, remaining bytes: 617.3 KB Downloaded simba v0.6.0 Downloading 127 crates, remaining bytes: 601.0 KB Downloaded typenum v1.17.0 Downloading 126 crates, remaining bytes: 584.6 KB Downloaded num-traits v0.2.18 Downloading 125 crates, remaining bytes: 568.2 KB Downloaded crossbeam-epoch v0.9.18 Downloading 124 crates, remaining bytes: 547.7 KB Downloaded rayon-core v1.12.1 Downloading 123 crates, remaining bytes: 531.3 KB Downloaded bit-set v0.5.3 Downloading 122 crates, remaining bytes: 514.9 KB Downloaded bv v0.11.1 Downloading 121 crates, remaining bytes: 498.6 KB Downloaded bytecount v0.6.7 Downloading 120 crates, remaining bytes: 482.2 KB Downloaded csv-core v0.1.11 Downloading 119 crates, remaining bytes: 465.8 KB Downloaded multimap v0.9.1 Downloading 118 crates, remaining bytes: 445.3 KB Downloaded ordered-float v3.9.2 Downloading 117 crates, remaining bytes: 428.9 KB Downloaded fixedbitset v0.4.2 Downloading 116 crates, remaining bytes: 412.5 KB Downloaded approx v0.5.1 Downloading 115 crates, remaining bytes: 396.2 KB Downloaded rand_chacha v0.3.1 Downloading 114 crates, remaining bytes: 379.8 KB Downloaded rand_core v0.6.4 Downloading 113 crates, remaining bytes: 363.4 KB Downloaded num-rational v0.4.1 Downloading 112 crates, remaining bytes: 342.9 KB Downloaded fnv v1.0.7 Downloading 111 crates, remaining bytes: 326.5 KB Downloaded enumset v1.1.3 Downloading 110 crates, remaining bytes: 310.1 KB Downloaded log v0.4.21 Downloading 109 crates, remaining bytes: 293.8 KB Downloaded smallvec v1.13.2 Downloading 108 crates, remaining bytes: 277.4 KB Downloaded dirs v5.0.1 Downloading 107 crates, remaining bytes: 261.0 KB Downloaded num-complex v0.4.5 Downloading 106 crates, remaining bytes: 240.5 KB Downloaded ryu v1.0.17 Downloading 105 crates, remaining bytes: 224.1 KB Downloaded crossbeam-utils v0.8.19 Downloading 104 crates, remaining bytes: 207.7 KB Downloaded shlex v1.3.0 Downloading 103 crates, remaining bytes: 191.4 KB Downloaded similar v2.5.0 Downloading 102 crates, remaining bytes: 175.0 KB Downloaded anstyle-parse v0.2.3 Downloading 101 crates, remaining bytes: 158.6 KB Downloaded anstream v0.6.13 Downloading 100 crates, remaining bytes: 138.1 KB Downloaded bitflags v2.5.0 Downloading 99 crates, remaining bytes: 121.7 KB Downloaded proc-macro2 v1.0.79 Downloading 98 crates, remaining bytes: 105.3 KB Downloaded quote v1.0.36 Downloading 97 crates, remaining bytes: 89.0 KB Downloaded unicode-ident v1.0.12 Downloading 96 crates, remaining bytes: 72.6 KB Downloaded toml_edit v0.22.12 Downloading 95 crates, remaining bytes: 56.2 KB Downloading 95 crates, remaining bytes: 35.7 KB Downloaded feature-probe v0.1.1 Downloading 94 crates, remaining bytes: 35.7 KB Downloaded custom_derive v0.1.7 Downloading 93 crates, remaining bytes: 19.3 KB Downloaded byteorder v1.5.0 Downloading 92 crates, remaining bytes: 2.9 KB Downloaded linux-raw-sys v0.4.13 Downloading 91 crates, extracting linux-raw-sys ... Downloaded fxhash v0.2.1 Downloading 90 crates Downloaded nalgebra-macros v0.1.0 Downloading 89 crates Downloaded paste v1.0.14 Downloading 88 crates Downloaded ppv-lite86 v0.2.17 Downloading 87 crates Downloaded rand v0.8.5 Downloading 86 crates Downloaded statrs v0.16.0 Downloading 85 crates Downloaded strum v0.25.0 Downloading 84 crates Downloaded heck v0.4.1 Downloading 83 crates Downloaded rustversion v1.0.15 Downloading 82 crates Downloaded strum_macros v0.25.3 Downloading 81 crates Downloaded thiserror-impl v1.0.58 Downloading 80 crates Downloaded thiserror v1.0.58 Downloading 79 crates Downloaded vec_map v0.8.2 Downloading 78 crates Downloaded bio v1.6.0 Downloading 77 crates Downloaded cc v1.0.92 Downloading 76 crates Downloaded cmake v0.1.50 Downloading 75 crates Downloaded clap_lex v0.7.0 Downloading 74 crates Downloaded clap_builder v4.5.2 Downloading 73 crates Downloaded heck v0.5.0 Downloading 72 crates Downloaded clap_derive v4.5.4 Downloading 71 crates Downloaded clap v4.5.4 Downloading 70 crates Downloaded bitflags v1.3.2 Downloading 69 crates Downloaded scopeguard v1.2.0 Downloading 68 crates Downloaded lock_api v0.4.11 Downloading 67 crates Downloaded parking_lot_core v0.9.9 Downloading 66 crates Downloaded parking_lot v0.12.1 Downloading 65 crates Downloaded mio v0.8.11 Downloading 64 crates Downloaded signal-hook v0.3.17 Downloading 63 crates Downloaded cursive v0.20.0 Downloading 62 crates Downloaded zerocopy v0.7.32 Downloading 61 crates Downloaded enum-map v2.7.3 Downloading 60 crates Downloaded lazy_static v1.4.0 Downloading 59 crates Downloaded num-iter v0.1.44 Downloading 58 crates Downloaded num v0.4.1 Downloading 57 crates Downloaded owning_ref v0.4.1 Downloading 56 crates Downloaded deranged v0.3.11 Downloading 55 crates Downloaded powerfmt v0.2.0 Downloading 54 crates Downloaded time-macros v0.2.18 Downloading 53 crates Downloaded darling v0.20.8 Downloading 52 crates Downloaded dirs-sys v0.4.1 Downloading 51 crates Downloaded hex v0.4.3 Downloading 50 crates Downloaded primal-check v0.3.3 Downloading 49 crates Downloaded autocfg v1.2.0 Downloading 48 crates Downloaded num-integer v0.1.46 Downloading 47 crates Downloaded strength_reduce v0.2.4 Downloading 46 crates Downloaded transpose v0.2.3 Downloading 45 crates Downloaded version_check v0.9.4 Downloading 44 crates Downloaded realfft v3.3.0 Downloading 43 crates Downloaded itoa v1.0.11 Downloading 42 crates Downloaded glob v0.3.1 Downloading 41 crates Downloaded humantime v2.1.0 Downloading 40 crates Downloaded humantime-serde v1.1.1 Downloading 39 crates Downloaded either v1.10.0 Downloading 38 crates Downloaded crossbeam-deque v0.8.5 Downloading 37 crates Downloaded content_inspector v0.2.4 Downloading 36 crates Downloaded dunce v1.0.4 Downloading 35 crates Downloaded filetime v0.2.23 Downloading 34 crates Downloaded anstyle v1.0.6 Downloading 33 crates Downloaded anstyle-query v1.0.2 Downloading 32 crates Downloaded utf8parse v0.2.1 Downloading 31 crates Downloaded cfg-if v1.0.0 Downloading 30 crates Downloaded fastrand v2.0.2 Downloading 29 crates Downloaded errno v0.3.8 Downloading 28 crates Downloaded tempfile v3.10.1 Downloading 27 crates Downloaded wait-timeout v0.2.0 Downloading 26 crates Downloaded same-file v1.0.6 Downloading 25 crates Downloaded walkdir v2.5.0 Downloading 24 crates Downloaded serde_spanned v0.6.5 Downloading 23 crates Downloaded crossterm v0.25.0 Downloading 22 crates Downloaded signal-hook-registry v1.4.1 Downloading 21 crates Downloaded getrandom v0.2.14 Downloading 20 crates Downloaded once_cell v1.19.0 Downloading 19 crates Downloaded ahash v0.8.11 Downloading 18 crates Downloaded enum-map-derive v0.17.0 Downloading 17 crates Downloaded stable_deref_trait v1.2.0 Downloading 16 crates Downloaded num_threads v0.1.7 Downloading 15 crates Downloaded num-conv v0.1.0 Downloading 14 crates Downloaded time-core v0.1.2 Downloading 13 crates Downloaded ident_case v1.0.1 Downloading 12 crates Downloaded darling_macro v0.20.8 Downloading 11 crates Downloaded enumset_derive v0.8.1 Downloading 10 crates Downloaded cursive_buffered_backend v0.6.1 Downloading 9 crates Downloaded option-ext v0.2.0 Downloading 8 crates Downloaded normalize-line-endings v0.3.0 Downloading 7 crates Downloaded os_pipe v1.1.5 Downloading 6 crates Downloaded colorchoice v1.0.0 Downloading 5 crates Downloaded snapbox-macros v0.3.8 Downloading 4 crates Downloaded equivalent v1.0.1 Downloading 3 crates Downloaded serde_derive v1.0.197 Downloading 2 crates Downloaded toml_datetime v0.6.5 Downloading 1 crate Downloaded unicode-width v0.1.11 Downloading 0 crates Downloaded 175 crates (12.6 MB) in 4.39s (largest was `linux-raw-sys` at 1.5 MB) ==> Starting build()... Compiling autocfg v1.2.0 Compiling proc-macro2 v1.0.79 Compiling unicode-ident v1.0.12 Compiling libc v0.2.153 Building [ ] 0/193: autocfg, proc-macro2(buil... Compiling libm v0.2.8 Building [ ] 1/193: autocfg, proc-macro2(buil... Building [ ] 2/193: autocfg, libm(build), pro... Building [ ] 3/193: autocfg, libm, proc-macro... Building [ ] 4/193: autocfg, proc-macro2(buil... Building [ ] 5/193: autocfg, libm, libc(build... Building [ ] 6/193: autocfg, libc(build), lib... Building [ ] 7/193: autocfg, libc, libm, proc... Compiling num-traits v0.2.18 Building [> ] 8/193: libc, libm, num-traits(bu... Building [> ] 9/193: libc, libm, proc-macro2, ... Compiling quote v1.0.36 Building [> ] 10/193: libc, quote, libm, proc-m... Compiling syn v2.0.58 Building [> ] 11/193: libc, quote, libm, syn Building [> ] 12/193: quote, libm, syn, num-traits Compiling cfg-if v1.0.0 Building [> ] 13/193: libm, cfg-if, syn, num-tr... Compiling getrandom v0.2.14 Building [> ] 14/193: libm, getrandom, syn, num... Compiling version_check v0.9.4 Building [=> ] 15/193: libm, version_check, syn,... Compiling num-rational v0.4.1 Building [=> ] 16/193: libm, syn, num-traits, nu... Compiling fnv v1.0.7 Building [=> ] 17/193: syn, num-traits, num-rati... Compiling memchr v2.7.2 Building [=> ] 18/193: syn, num-traits, num-rati... Building [=> ] 19/193: syn, num-traits, num-rati... Compiling ident_case v1.0.1 Building [=> ] 20/193: syn, num-traits, ident_ca... Compiling syn v1.0.109 Building [=> ] 21/193: syn, num-traits, syn(buil... Compiling num-integer v0.1.46 Building [=> ] 22/193: syn, num-traits, memchr, ... Compiling num-complex v0.4.5 Building [==> ] 23/193: syn, num-complex, memchr,... Compiling serde v1.0.197 Building [==> ] 24/193: serde(build.rs), syn, num... Building [==> ] 25/193: syn, num-complex, serde(b... Building [==> ] 26/193: num-rational, syn, num-co... Building [==> ] 27/193: num-rational, syn, num-co... Compiling itoa v1.0.11 Building [==> ] 28/193: num-rational, syn, itoa, ... Building [==> ] 29/193: num-rational, syn, num-co... Compiling rand_core v0.6.4 Building [===> ] 30/193: rand_core, num-rational, ... Compiling matrixmultiply v0.3.8 Building [===> ] 31/193: num-rational, syn, matrix... Compiling ppv-lite86 v0.2.17 Building [===> ] 32/193: num-rational, syn, syn, p... Compiling log v0.4.21 Building [===> ] 33/193: num-rational, syn, log, syn Compiling paste v1.0.14 Building [===> ] 34/193: paste(build.rs), num-rati... Compiling bytemuck v1.15.0 Building [===> ] 35/193: num-rational, syn, bytemu... Compiling darling_core v0.20.8 Building [===> ] 36/193: darling_core, num-rationa... Compiling lazy_static v1.4.0 Building [===> ] 37/193: lazy_static, darling_core... Compiling crossbeam-utils v0.8.19 Building [====> ] 38/193: crossbeam-utils(build.rs)... Building [====> ] 39/193: darling_core, syn, syn, c... Compiling safe_arch v0.7.1 Building [====> ] 40/193: darling_core, safe_arch, ... Building [====> ] 41/193: darling_core, syn, syn, p... Compiling rand_chacha v0.3.1 Building [====> ] 42/193: darling_core, syn, rand_c... Building [====> ] 43/193: darling_core, matrixmulti... Compiling aho-corasick v1.1.3 Building [====> ] 44/193: darling_core, aho-corasic... Compiling serde_derive v1.0.197 Building [=====> ] 45/193: darling_core, aho-corasic... Compiling darling_macro v0.20.8 Building [=====> ] 46/193: aho-corasick, serde_deriv... Compiling enum-map-derive v0.17.0 Building [=====> ] 47/193: aho-corasick, serde_deriv... Compiling darling v0.20.8 Building [=====> ] 48/193: aho-corasick, serde_deriv... Compiling ahash v0.8.11 Building [=====> ] 49/193: aho-corasick, serde_deriv... Compiling lock_api v0.4.11 Building [=====> ] 50/193: aho-corasick, serde_deriv... Compiling rawpointer v0.2.1 Building [=====> ] 51/193: aho-corasick, serde_deriv... Compiling smallvec v1.13.2 Building [======> ] 52/193: aho-corasick, serde_deriv... Compiling rustversion v1.0.15 Building [======> ] 53/193: aho-corasick, serde_deriv... Compiling parking_lot_core v0.9.9 Building [======> ] 54/193: parking_lot_core(build.rs... Compiling signal-hook v0.3.17 Building [======> ] 55/193: signal-hook(build.rs), pa... Compiling semver v0.1.20 Building [======> ] 56/193: signal-hook(build.rs), ah... Compiling powerfmt v0.2.0 Building [======> ] 57/193: aho-corasick, serde_deriv... Compiling regex-syntax v0.8.3 Building [======> ] 58/193: aho-corasick, serde_deriv... Compiling typenum v1.17.0 Building [======> ] 59/193: aho-corasick, serde_deriv... Building [=======> ] 60/193: aho-corasick, serde_deriv... Compiling deranged v0.3.11 Building [=======> ] 61/193: deranged, aho-corasick, s... Compiling rustc_version v0.1.7 Building [=======> ] 62/193: deranged, serde_derive, r... Building [=======> ] 63/193: deranged, serde_derive, r... Building [=======> ] 64/193: deranged, serde_derive, p... Building [=======> ] 65/193: deranged, serde_derive, r... Building [=======> ] 66/193: deranged, serde_derive, m... Building [========> ] 67/193: serde_derive, lock_api(bu... Compiling enum-map v2.7.3 Building [========> ] 68/193: serde_derive, matrixmulti... Building [========> ] 69/193: serde_derive, matrixmulti... Compiling regex-automata v0.4.6 Building [========> ] 70/193: serde_derive, matrixmulti... Building [========> ] 71/193: serde, matrixmultiply, re... Compiling enumset_derive v0.8.1 Building [========> ] 72/193: serde, enumset_derive, re... Compiling rand v0.8.5 Building [========> ] 73/193: rand, serde, regex-syntax... Building [========> ] 74/193: serde, regex-syntax, rege... Compiling wide v0.7.15 Building [=========> ] 75/193: serde, regex-syntax, rege... Building [=========> ] 76/193: crossbeam-utils, regex-sy... Compiling num-iter v0.1.44 Building [=========> ] 77/193: regex-syntax, regex-autom... Compiling approx v0.5.1 Building [=========> ] 78/193: regex-syntax, regex-autom... Compiling signal-hook-registry v1.4.1 Building [=========> ] 79/193: signal-hook-registry, reg... Compiling num_threads v0.1.7 Building [=========> ] 80/193: num_threads, regex-syntax... Compiling cc v1.0.92 Building [=========> ] 81/193: cc, regex-syntax, regex-a... Compiling scopeguard v1.2.0 Building [==========> ] 82/193: cc, regex-syntax, regex-a... Compiling zerocopy v0.7.32 Building [==========> ] 83/193: cc, regex-syntax, regex-a... Compiling num-conv v0.1.0 Building [==========> ] 84/193: cc, regex-syntax, regex-a... Compiling feature-probe v0.1.1 Building [==========> ] 85/193: feature-probe, cc, regex-... Compiling stable_deref_trait v1.2.0 Building [==========> ] 86/193: cc, regex-syntax, regex-a... Compiling utf8parse v0.2.1 Building [==========> ] 87/193: cc, regex-syntax, regex-a... Compiling thiserror v1.0.58 Building [==========> ] 88/193: thiserror(build.rs), cc, ... Compiling time-core v0.1.2 Building [==========> ] 89/193: thiserror(build.rs), time... Compiling once_cell v1.19.0 Building [===========> ] 90/193: thiserror(build.rs), rege... Compiling time v0.3.35 Building [===========> ] 91/193: thiserror(build.rs), time... Building [===========> ] 92/193: thiserror(build.rs), ahas... Building [===========> ] 93/193: ahash, time, regex-automa... Compiling anstyle-parse v0.2.3 Building [===========> ] 94/193: anstyle-parse, ahash, tim... Compiling owning_ref v0.4.1 Building [===========> ] 95/193: owning_ref, ahash, time, ... Compiling bv v0.11.1 Building [===========> ] 96/193: owning_ref, time, regex-a... Building [============> ] 97/193: time, lock_api, regex-aut... Compiling cmake v0.1.50 Building [============> ] 98/193: time, lock_api, regex-aut... Compiling simba v0.6.0 Building [============> ] 99/193: simba, time, regex-automa... Building [===========> ] 100/193: simba, time, regex-automa... 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Compiling mio v0.8.11 Building [=============> ] 112/193: simba, thiserror-impl, mi... Compiling rustfft v6.2.0 Building [=============> ] 113/193: thiserror-impl, mio, rege... Compiling strength_reduce v0.2.4 Building [=============> ] 114/193: thiserror-impl, mio, rege... Compiling xi-unicode v0.3.0 Building [=============> ] 115/193: thiserror-impl, regex-aut... Compiling anyhow v1.0.82 Building [==============> ] 116/193: thiserror-impl, regex-aut... Compiling anstyle v1.0.6 Building [==============> ] 117/193: anstyle, thiserror-impl, ... Compiling colorchoice v1.0.0 Building [==============> ] 118/193: anstyle, thiserror-impl, ... Compiling unicode-segmentation v1.11.0 Building [==============> ] 119/193: unicode-segmentation, thi... Compiling unicode-width v0.1.11 Building [==============> ] 120/193: unicode-width, unicode-se... Compiling anstyle-query v1.0.2 Building [==============> ] 121/193: unicode-segmentation, thi... 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Building [================> ] 133/193: rustfft(build), regex-aut... Compiling signal-hook-mio v0.2.3 Building [================> ] 134/193: regex-automata, strum_mac... Compiling nalgebra v0.29.0 Building [================> ] 135/193: regex-automata, strum_mac... Building [================> ] 136/193: newtype_derive(build), re... Compiling parking_lot v0.12.1 Building [================> ] 137/193: parking_lot, regex-automa... Compiling biodiff-wfa2-sys v2.3.5 (/build/biodiff/src/biodiff-1.2.1/biodiff-wfa2-sys) Building [================> ] 138/193: parking_lot, biodiff-wfa2... Building [=================> ] 139/193: parking_lot, bv(build), c... Compiling derive-new v0.5.9 Building [=================> ] 140/193: parking_lot, derive-new, ... Compiling primal-check v0.3.3 Building [=================> ] 141/193: primal-check, derive-new,... Compiling csv-core v0.1.11 Building [=================> ] 142/193: csv-core, derive-new, cur... Compiling fixedbitset v0.4.2 Building [=================> ] 143/193: fixedbitset, derive-new, ... Compiling either v1.10.0 Building [=================> ] 144/193: fixedbitset, either, curs... Compiling bitflags v1.3.2 Building [=================> ] 145/193: fixedbitset, cursive_core... Compiling serde_json v1.0.115 Building [=================> ] 146/193: serde_json(build.rs), fix... Compiling clap_lex v0.7.0 Building [==================> ] 147/193: serde_json(build.rs), cla... Compiling option-ext v0.2.0 Building [==================> ] 148/193: option-ext, clap_lex, cur... Compiling byteorder v1.5.0 Building [==================> ] 149/193: byteorder, clap_lex, curs... Compiling heck v0.5.0 Building [==================> ] 150/193: byteorder, cursive_core, ... Compiling bit-vec v0.6.3 Building [==================> ] 151/193: bit-vec, cursive_core, na... Compiling clap_derive v4.5.4 Building [==================> ] 152/193: bit-vec, clap_derive, cur... Compiling bit-set v0.5.3 Building [==================> ] 153/193: bit-set, clap_derive, cur... Compiling fxhash v0.2.1 Building [==================> ] 154/193: clap_derive, fxhash, curs... Compiling dirs-sys v0.4.1 Building [===================> ] 155/193: dirs-sys, clap_derive, cu... Building [===================> ] 156/193: serde_json(build), clap_d... Compiling clap_builder v4.5.2 Building [===================> ] 157/193: clap_builder, clap_derive... Compiling crossterm v0.25.0 Building [===================> ] 158/193: crossterm, clap_builder, ... Compiling itertools v0.11.0 Building [===================> ] 159/193: itertools, clap_builder, ... Compiling petgraph v0.6.4 Building [===================> ] 160/193: petgraph, clap_builder, c... Compiling bio-types v1.0.1 Building [===================> ] 161/193: petgraph, bio-types, clap... Compiling statrs v0.16.0 Building [===================> ] 162/193: petgraph, bio-types, clap... Compiling csv v1.3.0 Building [====================> ] 163/193: petgraph, csv, clap_build... Building [====================> ] 164/193: rustfft, csv, clap_builde... Building [====================> ] 165/193: rustfft, clap_builder, st... Building [====================> ] 166/193: biodiff-wfa2-sys(build), ... Building [====================> ] 167/193: biodiff-wfa2-sys(build), ... Building [====================> ] 168/193: biodiff-wfa2-sys(build), ... Compiling vec_map v0.8.2 Building [====================> ] 169/193: biodiff-wfa2-sys(build), ... Compiling multimap v0.9.1 Building [=====================> ] 170/193: biodiff-wfa2-sys(build), ... Compiling ndarray v0.15.6 Building [=====================> ] 171/193: biodiff-wfa2-sys(build), ... Compiling ordered-float v3.9.2 Building [=====================> ] 172/193: biodiff-wfa2-sys(build), ... Compiling itertools-num v0.1.3 Building [=====================> ] 173/193: biodiff-wfa2-sys(build), ... Compiling triple_accel v0.4.0 Building [=====================> ] 174/193: biodiff-wfa2-sys(build), ... Compiling strum v0.25.0 Building [=====================> ] 175/193: biodiff-wfa2-sys(build), ... Compiling editdistancek v1.0.2 Building [=====================> ] 176/193: biodiff-wfa2-sys(build), ... Compiling custom_derive v0.1.7 Building [=====================> ] 177/193: biodiff-wfa2-sys(build), ... Compiling bytecount v0.6.7 Building [======================> ] 178/193: biodiff-wfa2-sys(build), ... Compiling realfft v3.3.0 Building [======================> ] 179/193: biodiff-wfa2-sys(build), ... Compiling cursive v0.20.0 Building [======================> ] 180/193: biodiff-wfa2-sys(build), ... Building [======================> ] 181/193: ndarray, biodiff-wfa2-sys... Compiling clap v4.5.4 Building [======================> ] 182/193: ndarray, cursive, clap_bu... Building [======================> ] 183/193: serde_json, ndarray, curs... Compiling dirs v5.0.1 Building [======================> ] 184/193: dirs, serde_json, ndarray... Compiling cursive_buffered_backend v0.6.1 Building [======================> ] 185/193: serde_json, ndarray, curs... Compiling hexagex v0.2.3 (/build/biodiff/src/biodiff-1.2.1/hexagex) Building [=======================> ] 186/193: serde_json, ndarray, hexa... Compiling bio v1.6.0 Building [=======================> ] 187/193: bio, serde_json, hexagex,... Building [=======================> ] 188/193: bio, serde_json, hexagex Building [=======================> ] 189/193: bio, hexagex Building [=======================> ] 190/193: bio Compiling biodiff v1.2.1 (/build/biodiff/src/biodiff-1.2.1) Building [=======================> ] 191/193: biodiff(bin), git-biodiff... Building [=======================> ] 192/193: biodiff(bin) Finished release [optimized] target(s) in 7m 21s ==> Entering fakeroot environment... ==> Starting package()... ==> Tidying install... -> Removing libtool files... -> Purging unwanted files... -> Removing static library files... -> Stripping unneeded symbols from binaries and libraries... -> Compressing man and info pages... ==> Checking for packaging issues... ==> Creating package "biodiff"... -> Generating .PKGINFO file... -> Generating .BUILDINFO file... -> Generating .MTREE file... -> Compressing package... ==> Leaving fakeroot environment. ==> Finished making: biodiff 1.2.1-1 (Sun Apr 21 08:34:02 2024) ==> Cleaning up...