==> Synchronizing chroot copy [/home/leming/armv7/root] -> [leming]...done
==> Making package: biodiff 1.2.1-1 (Sun Apr 21 08:25:27 2024)
==> Retrieving sources...
  -> Cloning biodiff-1.2.1 git repo...
Cloning into bare repository '/home/leming/work/biodiff/biodiff-1.2.1'...
  -> Cloning biodiff-WFA2-lib git repo...
Cloning into bare repository '/home/leming/work/biodiff/biodiff-WFA2-lib'...
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
    biodiff-1.2.1 ... Skipped
    biodiff-WFA2-lib ... Skipped
==> Making package: biodiff 1.2.1-1 (Sun Apr 21 08:25:51 2024)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
[?25l:: There are 2 providers available for cargo:
:: Repository extra
   1) rust  2) rustup

Enter a number (default=1): 
resolving dependencies...
looking for conflicting packages...

Packages (13) cppdap-1.58.0-1  hicolor-icon-theme-0.17-3  jsoncpp-1.9.5-2
              libedit-20230828_3.1-1  libuv-1.48.0-2  llvm-libs-17.0.6-2
              perl-error-0.17029-5  perl-mailtools-2.21-7  perl-timedate-2.33-5
              rhash-1.4.4-1  cmake-3.29.2-1  git-2.44.0-1  rust-1:1.77.2-1

Total Download Size:    97.59 MiB
Total Installed Size:  434.85 MiB

:: Proceed with installation? [Y/n] 
:: Retrieving packages...
 rust-1:1.77.2-1-armv7h downloading...
 llvm-libs-17.0.6-2-armv7h downloading...
 cmake-3.29.2-1-armv7h downloading...
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 perl-mailtools-2.21-7-any downloading...
 perl-timedate-2.33-5-any downloading...
 perl-error-0.17029-5-any downloading...
 hicolor-icon-theme-0.17-3-any downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing libedit...
installing llvm-libs...
installing rust...
Optional dependencies for rust
    gdb: rust-gdb script
    lldb: rust-lldb script
installing hicolor-icon-theme...
installing jsoncpp...
Optional dependencies for jsoncpp
    jsoncpp-doc: documentation
installing libuv...
installing rhash...
installing cppdap...
installing cmake...
Optional dependencies for cmake
    make: for unix Makefile generator [installed]
    ninja: for ninja generator
    qt6-base: cmake-gui
installing perl-error...
installing perl-timedate...
installing perl-mailtools...
installing git...
Optional dependencies for git
    tk: gitk and git gui
    openssh: ssh transport and crypto
    perl-libwww: git svn
    perl-term-readkey: git svn and interactive.singlekey setting
    perl-io-socket-ssl: git send-email TLS support
    perl-authen-sasl: git send-email TLS support
    perl-mediawiki-api: git mediawiki support
    perl-datetime-format-iso8601: git mediawiki support
    perl-lwp-protocol-https: git mediawiki https support
    perl-cgi: gitweb (web interface) support
    python: git svn & git p4
    subversion: git svn
    org.freedesktop.secrets: keyring credential helper
    libsecret: libsecret credential helper [installed]
:: Running post-transaction hooks...
(1/1) Warn about old perl modules
[?25h==> Retrieving sources...
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
  -> Creating working copy of biodiff-1.2.1 git repo...
Cloning into 'biodiff-1.2.1'...
done.
Switched to a new branch 'makepkg'
  -> Creating working copy of biodiff-WFA2-lib git repo...
Cloning into 'biodiff-WFA2-lib'...
done.
==> Starting prepare()...
Submodule 'biodiff-wfa2-sys/WFA2-lib' (https://github.com/smarco/WFA2-lib) registered for path 'biodiff-wfa2-sys/WFA2-lib'
Cloning into '/build/biodiff/src/biodiff-1.2.1/biodiff-wfa2-sys/WFA2-lib'...
done.
Submodule path 'biodiff-wfa2-sys/WFA2-lib': checked out 'cf3eb92dd0aa9bf067d5488a606d8c91173e74eb'
    Updating crates.io index
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==> Starting build()...
   Compiling autocfg v1.2.0
   Compiling proc-macro2 v1.0.79
   Compiling unicode-ident v1.0.12
   Compiling libc v0.2.153
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   Compiling num-traits v0.2.18
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   Compiling quote v1.0.36
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   Compiling syn v2.0.58
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   Compiling cfg-if v1.0.0
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   Compiling getrandom v0.2.14
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   Compiling version_check v0.9.4
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   Compiling num-rational v0.4.1
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   Compiling fnv v1.0.7
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   Compiling syn v1.0.109
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   Compiling rand_core v0.6.4
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   Compiling matrixmultiply v0.3.8
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   Compiling bytemuck v1.15.0
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   Compiling darling_core v0.20.8
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   Compiling safe_arch v0.7.1
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   Compiling rand_chacha v0.3.1
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   Compiling darling_macro v0.20.8
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   Compiling smallvec v1.13.2
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   Compiling rustversion v1.0.15
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   Compiling signal-hook v0.3.17
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   Compiling semver v0.1.20
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   Compiling powerfmt v0.2.0
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   Compiling rustc_version v0.1.7
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   Compiling wide v0.7.15
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   Compiling num-iter v0.1.44
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   Compiling approx v0.5.1
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   Compiling signal-hook-registry v1.4.1
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   Compiling num_threads v0.1.7
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   Compiling cc v1.0.92
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   Compiling utf8parse v0.2.1
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   Compiling thiserror v1.0.58
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   Compiling time-core v0.1.2
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   Compiling once_cell v1.19.0
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   Compiling time v0.3.35
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   Compiling anstyle-parse v0.2.3
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   Compiling owning_ref v0.4.1
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   Compiling bv v0.11.1
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   Compiling num v0.4.1
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   Compiling crossbeam-channel v0.5.12
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   Compiling thiserror-impl v1.0.58
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   Compiling mio v0.8.11
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   Compiling rustfft v6.2.0
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   Compiling strength_reduce v0.2.4
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   Compiling xi-unicode v0.3.0
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   Compiling anyhow v1.0.82
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   Compiling anstyle v1.0.6
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   Compiling colorchoice v1.0.0
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   Compiling unicode-segmentation v1.11.0
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   Compiling anstyle-query v1.0.2
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   Compiling equivalent v1.0.1
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   Compiling ryu v1.0.17
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   Compiling heck v0.4.1
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   Compiling hashbrown v0.14.3
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   Compiling cursive_core v0.3.7
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   Compiling strum_macros v0.25.3
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   Compiling indexmap v2.2.6
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   Compiling anstream v0.6.13
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   Compiling transpose v0.2.3
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   Compiling nalgebra v0.29.0
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   Compiling parking_lot v0.12.1
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   Compiling biodiff-wfa2-sys v2.3.5 (/build/biodiff/src/biodiff-1.2.1/biodiff-wfa2-sys)
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   Compiling derive-new v0.5.9
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   Compiling csv-core v0.1.11
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   Compiling fixedbitset v0.4.2
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   Compiling either v1.10.0
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   Compiling serde_json v1.0.115
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   Compiling clap_lex v0.7.0
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   Compiling option-ext v0.2.0
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   Compiling byteorder v1.5.0
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   Compiling clap_derive v4.5.4
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   Compiling bit-set v0.5.3
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   Compiling fxhash v0.2.1
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   Compiling dirs-sys v0.4.1
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   Compiling clap_builder v4.5.2
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   Compiling crossterm v0.25.0
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   Compiling itertools v0.11.0
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   Compiling petgraph v0.6.4
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   Compiling statrs v0.16.0
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   Compiling csv v1.3.0
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   Compiling vec_map v0.8.2
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   Compiling multimap v0.9.1
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   Compiling ndarray v0.15.6
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   Compiling triple_accel v0.4.0
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   Compiling bytecount v0.6.7
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   Compiling clap v4.5.4
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   Compiling dirs v5.0.1
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   Compiling cursive_buffered_backend v0.6.1
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   Compiling hexagex v0.2.3 (/build/biodiff/src/biodiff-1.2.1/hexagex)
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   Compiling bio v1.6.0
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   Compiling biodiff v1.2.1 (/build/biodiff/src/biodiff-1.2.1)
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    Finished release [optimized] target(s) in 7m 21s
==> Entering fakeroot environment...
==> Starting package()...
==> Tidying install...
  -> Removing libtool files...
  -> Purging unwanted files...
  -> Removing static library files...
  -> Stripping unneeded symbols from binaries and libraries...
  -> Compressing man and info pages...
==> Checking for packaging issues...
==> Creating package "biodiff"...
  -> Generating .PKGINFO file...
  -> Generating .BUILDINFO file...
  -> Generating .MTREE file...
  -> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: biodiff 1.2.1-1 (Sun Apr 21 08:34:02 2024)
==> Cleaning up...