==> Synchronizing chroot copy [/home/leming/armv8/root] -> [leming]...done ==> Making package: biodiff 1.2.1-1 (Sun Apr 21 09:18:36 2024) ==> Retrieving sources... -> Cloning biodiff-1.2.1 git repo... Cloning into bare repository '/home/leming/work/biodiff/biodiff-1.2.1'... -> Cloning biodiff-WFA2-lib git repo... Cloning into bare repository '/home/leming/work/biodiff/biodiff-WFA2-lib'... ==> WARNING: Skipping verification of source file PGP signatures. ==> Validating source files with sha256sums... biodiff-1.2.1 ... Skipped biodiff-WFA2-lib ... Skipped ==> Making package: biodiff 1.2.1-1 (Sun Apr 21 09:18:46 2024) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Installing missing dependencies... [?25l:: There are 2 providers available for cargo: :: Repository extra 1) rust 2) rustup Enter a number (default=1): resolving dependencies... looking for conflicting packages... Packages (13) cppdap-1.58.0-1 hicolor-icon-theme-0.17-3 jsoncpp-1.9.5-2 libedit-20230828_3.1-1 libuv-1.48.0-2 llvm-libs-17.0.6-2 perl-error-0.17029-5 perl-mailtools-2.21-7 perl-timedate-2.33-5 rhash-1.4.4-1 cmake-3.29.2-1 git-2.44.0-1 rust-1:1.77.2-1 Total Download Size: 18.30 MiB Total Installed Size: 466.65 MiB :: Proceed with installation? [Y/n] :: Retrieving packages... cmake-3.29.2-1-aarch64 downloading... cppdap-1.58.0-1-aarch64 downloading... libuv-1.48.0-2-aarch64 downloading... rhash-1.4.4-1-aarch64 downloading... jsoncpp-1.9.5-2-aarch64 downloading... hicolor-icon-theme-0.17-3-any downloading... checking keyring... checking package integrity... loading package files... checking for file conflicts... checking available disk space... :: Processing package changes... installing libedit... installing llvm-libs... installing rust... Optional dependencies for rust gdb: rust-gdb script lldb: rust-lldb script installing hicolor-icon-theme... installing jsoncpp... Optional dependencies for jsoncpp jsoncpp-doc: documentation installing libuv... installing rhash... installing cppdap... installing cmake... Optional dependencies for cmake make: for unix Makefile generator [installed] ninja: for ninja generator qt6-base: cmake-gui installing perl-error... installing perl-timedate... installing perl-mailtools... installing git... Optional dependencies for git tk: gitk and git gui openssh: ssh transport and crypto perl-libwww: git svn perl-term-readkey: git svn and interactive.singlekey setting perl-io-socket-ssl: git send-email TLS support perl-authen-sasl: git send-email TLS support perl-mediawiki-api: git mediawiki support perl-datetime-format-iso8601: git mediawiki support perl-lwp-protocol-https: git mediawiki https support perl-cgi: gitweb (web interface) support python: git svn & git p4 subversion: git svn org.freedesktop.secrets: keyring credential helper libsecret: libsecret credential helper [installed] :: Running post-transaction hooks... (1/1) Warn about old perl modules [?25h==> Retrieving sources... ==> WARNING: Skipping all source file integrity checks. ==> Extracting sources... -> Creating working copy of biodiff-1.2.1 git repo... Cloning into 'biodiff-1.2.1'... done. Switched to a new branch 'makepkg' -> Creating working copy of biodiff-WFA2-lib git repo... Cloning into 'biodiff-WFA2-lib'... done. ==> Starting prepare()... Submodule 'biodiff-wfa2-sys/WFA2-lib' (https://github.com/smarco/WFA2-lib) registered for path 'biodiff-wfa2-sys/WFA2-lib' Cloning into '/build/biodiff/src/biodiff-1.2.1/biodiff-wfa2-sys/WFA2-lib'... done. Submodule path 'biodiff-wfa2-sys/WFA2-lib': checked out 'cf3eb92dd0aa9bf067d5488a606d8c91173e74eb' Updating crates.io index Fetch [==============> ] 33 complete; 44 pending Fetch [==============> ] 74 complete; 3 pending Fetch [=================> ] 77 complete; 59 pending Fetch [=================> ] 130 complete; 6 pending Fetch [====================> ] 136 complete; 30 pending Fetch [=======================> ] 166 complete; 23 pending Fetch [==========================> ] 189 complete; 4 pending Downloading 1 crate Downloading 2 crates Downloading 3 crates Downloading 4 crates Downloading 5 crates Downloading 6 crates Downloading 7 crates Downloading 8 crates Downloading 9 crates Downloading 10 crates Downloading 11 crates Downloading 12 crates Downloading 13 crates Downloading 14 crates Downloading 15 crates Downloading 16 crates Downloading 17 crates Downloading 18 crates Downloading 19 crates Downloading 20 crates Downloading 21 crates Downloading 22 crates Downloading 23 crates 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v1.0.82 Downloading 167 crates, remaining bytes: 3.8 MB Downloaded byteorder v1.5.0 Downloading 166 crates, remaining bytes: 6.5 MB Downloaded bit-vec v0.6.3 Downloading 165 crates, remaining bytes: 7.3 MB Downloaded bio-types v1.0.1 Downloading 164 crates, remaining bytes: 8.0 MB Downloaded nalgebra-macros v0.1.0 Downloading 163 crates, remaining bytes: 7.7 MB Downloaded fixedbitset v0.4.2 Downloading 162 crates, remaining bytes: 7.6 MB Downloaded matrixmultiply v0.3.8 Downloading 161 crates, remaining bytes: 7.4 MB Downloaded itertools v0.11.0 Downloading 160 crates, remaining bytes: 7.3 MB Downloaded petgraph v0.6.4 Downloading 159 crates, remaining bytes: 7.1 MB Downloaded anstream v0.6.13 Downloading 158 crates, remaining bytes: 7.0 MB Downloaded quote v1.0.36 Downloading 157 crates, remaining bytes: 6.9 MB Downloaded ndarray v0.15.6 Downloading 156 crates, remaining bytes: 6.8 MB Downloaded num-conv v0.1.0 Downloading 155 crates, remaining bytes: 6.7 MB Downloaded dunce v1.0.4 Downloading 154 crates, remaining bytes: 6.6 MB Downloaded crossbeam-deque v0.8.5 Downloading 153 crates, remaining bytes: 6.6 MB Downloaded wait-timeout v0.2.0 Downloading 152 crates, remaining bytes: 6.5 MB Downloaded autocfg v1.2.0 Downloading 151 crates, remaining bytes: 6.4 MB Downloaded humantime v2.1.0 Downloading 150 crates, remaining bytes: 6.3 MB Downloaded hex v0.4.3 Downloading 149 crates, remaining bytes: 6.2 MB Downloaded fnv v1.0.7 Downloading 148 crates, remaining bytes: 6.2 MB Downloaded shlex v1.3.0 Downloading 147 crates, remaining bytes: 6.1 MB Downloaded lazy_static v1.4.0 Downloading 146 crates, remaining bytes: 6.0 MB Downloaded either v1.10.0 Downloading 145 crates, remaining bytes: 6.2 MB Downloaded csv v1.3.0 Downloading 144 crates, extracting csv ... Downloaded enumset_derive v0.8.1 Downloading 143 crates, remaining bytes: 6.0 MB Downloaded num-integer v0.1.46 Downloading 142 crates, remaining bytes: 5.9 MB Downloaded winnow v0.6.6 Downloading 141 crates, remaining bytes: 5.9 MB Downloaded dirs v5.0.1 Downloading 140 crates, remaining bytes: 5.8 MB Downloaded transpose v0.2.3 Downloading 139 crates, remaining bytes: 5.7 MB Downloaded itoa v1.0.11 Downloading 138 crates, remaining bytes: 5.7 MB Downloaded fxhash v0.2.1 Downloading 137 crates, remaining bytes: 5.6 MB Downloaded syn v1.0.109 Downloading 136 crates, remaining bytes: 5.6 MB Downloaded bitflags v2.5.0 Downloading 135 crates, remaining bytes: 5.6 MB Downloaded snapbox v0.5.9 Downloading 134 crates, remaining bytes: 5.5 MB Downloaded anstyle-parse v0.2.3 Downloading 133 crates, remaining bytes: 5.4 MB Downloaded num-iter v0.1.44 Downloading 132 crates, remaining bytes: 5.4 MB Downloaded powerfmt v0.2.0 Downloading 131 crates, remaining bytes: 5.4 MB Downloaded strength_reduce v0.2.4 Downloading 130 crates, remaining bytes: 5.4 MB Downloaded owning_ref v0.4.1 Downloading 129 crates, remaining bytes: 5.3 MB Downloaded deranged v0.3.11 Downloading 128 crates, remaining bytes: 5.3 MB Downloaded num v0.4.1 Downloading 127 crates, remaining bytes: 5.3 MB Downloaded stable_deref_trait v1.2.0 Downloading 126 crates, remaining bytes: 5.2 MB Downloaded anstyle-query v1.0.2 Downloading 125 crates, remaining bytes: 5.2 MB Downloaded enum-map v2.7.3 Downloading 124 crates, remaining bytes: 5.2 MB Downloaded num-rational v0.4.1 Downloading 123 crates, remaining bytes: 5.1 MB Downloaded darling v0.20.8 Downloading 122 crates, remaining bytes: 5.1 MB Downloaded time-macros v0.2.18 Downloading 121 crates, remaining bytes: 5.0 MB Downloaded unicode-ident v1.0.12 Downloading 120 crates, remaining bytes: 5.0 MB Downloaded log v0.4.21 Downloading 119 crates, remaining bytes: 4.9 MB Downloaded crossbeam-utils v0.8.19 Downloading 118 crates, remaining bytes: 4.9 MB Downloaded enumset v1.1.3 Downloading 117 crates, remaining bytes: 4.8 MB Downloaded crossbeam-epoch v0.9.18 Downloading 116 crates, remaining bytes: 4.7 MB Downloaded num-traits v0.2.18 Downloading 115 crates, remaining bytes: 4.7 MB Downloaded indexmap v2.2.6 Downloading 114 crates, remaining bytes: 4.6 MB Downloaded ryu v1.0.17 Downloading 113 crates, remaining bytes: 4.6 MB Downloaded rayon-core v1.12.1 Downloading 112 crates, remaining bytes: 4.5 MB Downloaded similar v2.5.0 Downloading 111 crates, remaining bytes: 4.4 MB Downloaded num-complex v0.4.5 Downloading 110 crates, remaining bytes: 4.3 MB Downloaded walkdir v2.5.0 Downloading 109 crates, remaining bytes: 4.3 MB Downloaded proc-macro2 v1.0.79 Downloading 108 crates, remaining bytes: 4.3 MB Downloaded darling_core v0.20.8 Downloading 107 crates, remaining bytes: 4.2 MB Downloaded smallvec v1.13.2 Downloading 106 crates, remaining bytes: 4.1 MB Downloaded realfft v3.3.0 Downloading 105 crates, remaining bytes: 4.1 MB Downloaded version_check v0.9.4 Downloading 104 crates, remaining bytes: 4.0 MB Downloaded os_pipe v1.1.5 Downloading 103 crates, remaining bytes: 4.0 MB Downloaded dirs-sys v0.4.1 Downloading 102 crates, remaining bytes: 3.9 MB Downloaded primal-check v0.3.3 Downloading 101 crates, remaining bytes: 3.9 MB Downloaded xi-unicode v0.3.0 Downloading 100 crates, remaining bytes: 3.9 MB Downloaded libm v0.2.8 Downloading 99 crates, remaining bytes: 3.8 MB Downloaded unicode-segmentation v1.11.0 Downloading 98 crates, remaining bytes: 3.7 MB Downloaded hashbrown v0.14.3 Downloading 97 crates, remaining bytes: 3.6 MB Downloaded glob v0.3.1 Downloading 96 crates, remaining bytes: 3.6 MB Downloaded filetime v0.2.23 Downloading 95 crates, remaining bytes: 3.5 MB Downloaded same-file v1.0.6 Downloading 94 crates, remaining bytes: 3.5 MB Downloaded cursive_buffered_backend v0.6.1 Downloading 93 crates, remaining bytes: 3.5 MB Downloaded content_inspector v0.2.4 Downloading 92 crates, remaining bytes: 3.4 MB Downloaded anstyle v1.0.6 Downloading 91 crates, remaining bytes: 3.4 MB Downloaded time v0.3.35 Downloading 90 crates, remaining bytes: 3.3 MB Downloaded utf8parse v0.2.1 Downloading 89 crates, remaining bytes: 3.2 MB Downloaded rand_distr v0.4.3 Downloading 88 crates, remaining bytes: 3.2 MB Downloaded serde_json v1.0.115 Downloading 87 crates, remaining bytes: 3.1 MB Downloaded cursive_core v0.3.7 Downloading 86 crates, remaining bytes: 3.1 MB Downloaded aho-corasick v1.1.3 Downloading 85 crates, remaining bytes: 3.0 MB Downloaded nalgebra v0.29.0 Downloading 84 crates, remaining bytes: 2.9 MB Downloaded time-core v0.1.2 Downloading 83 crates, remaining bytes: 2.8 MB Downloaded darling_macro v0.20.8 Downloading 82 crates, remaining bytes: 2.8 MB Downloaded bv v0.11.1 Downloading 81 crates, remaining bytes: 2.8 MB Downloaded rayon v1.10.0 Downloading 80 crates, remaining bytes: 2.7 MB Downloaded bytecount v0.6.7 Downloading 79 crates, remaining bytes: 2.6 MB Downloaded editdistancek v1.0.2 Downloading 78 crates, remaining bytes: 2.6 MB Downloaded itertools-num v0.1.3 Downloading 77 crates, remaining bytes: 2.6 MB Downloaded ppv-lite86 v0.2.17 Downloading 76 crates, remaining bytes: 2.5 MB Downloaded feature-probe v0.1.1 Downloading 75 crates, remaining bytes: 2.5 MB Downloaded csv-core v0.1.11 Downloading 74 crates, remaining bytes: 2.5 MB Downloaded regex v1.10.4 Downloading 73 crates, remaining bytes: 2.4 MB Downloaded custom_derive v0.1.7 Downloading 72 crates, remaining bytes: 2.3 MB Downloaded multimap v0.9.1 Downloading 71 crates, remaining bytes: 2.3 MB Downloaded syn v2.0.58 Downloading 70 crates, remaining bytes: 2.3 MB Downloaded rawpointer v0.2.1 Downloading 69 crates, remaining bytes: 2.2 MB Downloaded simba v0.6.0 Downloading 68 crates, remaining bytes: 2.2 MB Downloaded rand_chacha v0.3.1 Downloading 67 crates, remaining bytes: 2.2 MB Downloaded rand v0.8.5 Downloading 66 crates, remaining bytes: 2.1 MB Downloaded statrs v0.16.0 Downloading 65 crates, remaining bytes: 2.0 MB Downloaded heck v0.4.1 Downloading 64 crates, remaining bytes: 1.9 MB Downloaded rustix v0.38.32 Downloading 63 crates, remaining bytes: 1.9 MB Downloaded bio v1.6.0 Downloading 62 crates, remaining bytes: 1.8 MB Downloaded rustfft v6.2.0 Downloading 61 crates, remaining bytes: 1.8 MB Downloaded regex-syntax v0.8.3 Downloading 60 crates, remaining bytes: 1.7 MB Downloaded crossterm v0.25.0 Downloading 59 crates, remaining bytes: 1.6 MB Downloaded num_threads v0.1.7 Downloading 58 crates, remaining bytes: 1.6 MB Downloaded colorchoice v1.0.0 Downloading 57 crates, remaining bytes: 1.5 MB Downloaded newtype_derive v0.1.6 Downloading 56 crates, remaining bytes: 1.5 MB Downloaded ordered-float v3.9.2 Downloading 55 crates, remaining bytes: 1.4 MB Downloaded paste v1.0.14 Downloading 54 crates, remaining bytes: 1.3 MB Downloaded bytemuck v1.15.0 Downloading 53 crates, remaining bytes: 1.3 MB Downloaded safe_arch v0.7.1 Downloading 52 crates, remaining bytes: 1.2 MB Downloaded wide v0.7.15 Downloading 51 crates, remaining bytes: 1.1 MB Downloaded rand_core v0.6.4 Downloading 50 crates, remaining bytes: 1.1 MB Downloaded regex-automata v0.4.6 Downloading 49 crates, extracting regex-automata ... Downloaded strum v0.25.0 Downloading 48 crates, remaining bytes: 1009.8 KB Downloaded thiserror-impl v1.0.58 Downloading 47 crates, remaining bytes: 977.1 KB Downloaded cc v1.0.92 Downloading 46 crates, remaining bytes: 944.3 KB Downloaded clap_lex v0.7.0 Downloading 45 crates, remaining bytes: 911.6 KB Downloaded clap_builder v4.5.2 Downloading 44 crates, remaining bytes: 878.8 KB Downloaded clap v4.5.4 Downloading 43 crates, remaining bytes: 841.1 KB Downloaded libc v0.2.153 Downloading 42 crates, extracting libc ... Downloaded mio v0.8.11 Downloading 41 crates, remaining bytes: 788.6 KB Downloaded zerocopy v0.7.32 Downloading 40 crates, remaining bytes: 772.2 KB Downloaded option-ext v0.2.0 Downloading 39 crates, remaining bytes: 755.9 KB Downloaded humantime-serde v1.1.1 Downloading 38 crates, remaining bytes: 739.5 KB Downloaded normalize-line-endings v0.3.0 Downloading 37 crates, remaining bytes: 723.1 KB Downloaded tempfile v3.10.1 Downloading 36 crates, remaining bytes: 703.3 KB Downloaded bit-set v0.5.3 Downloading 35 crates, remaining bytes: 687.0 KB Downloaded typenum v1.17.0 Downloading 34 crates, remaining bytes: 670.6 KB Downloaded vec_map v0.8.2 Downloading 33 crates, remaining bytes: 654.2 KB Downloaded ident_case v1.0.1 Downloading 32 crates, remaining bytes: 637.8 KB Downloaded snapbox-macros v0.3.8 Downloading 31 crates, remaining bytes: 621.5 KB Downloaded cfg-if v1.0.0 Downloading 30 crates, remaining bytes: 600.9 KB Downloaded serde_spanned v0.6.5 Downloading 29 crates, remaining bytes: 584.6 KB Downloaded cursive v0.20.0 Downloading 28 crates, remaining bytes: 568.2 KB Downloaded toml_edit v0.22.12 Downloading 27 crates, remaining bytes: 551.8 KB Downloaded rustc_version v0.1.7 Downloading 26 crates, remaining bytes: 535.4 KB Downloaded approx v0.5.1 Downloading 25 crates, remaining bytes: 519.1 KB Downloaded strum_macros v0.25.3 Downloading 24 crates, remaining bytes: 498.5 KB Downloaded thiserror v1.0.58 Downloading 23 crates, remaining bytes: 482.2 KB Downloaded triple_accel v0.4.0 Downloading 22 crates, remaining bytes: 465.8 KB Downloaded cmake v0.1.50 Downloading 21 crates, remaining bytes: 449.4 KB Downloaded heck v0.5.0 Downloading 20 crates, remaining bytes: 433.0 KB Downloaded clap_derive v4.5.4 Downloading 19 crates, remaining bytes: 416.7 KB Downloaded bitflags v1.3.2 Downloading 18 crates, remaining bytes: 396.1 KB Downloaded scopeguard v1.2.0 Downloading 17 crates, remaining bytes: 379.8 KB Downloaded parking_lot_core v0.9.9 Downloading 16 crates, remaining bytes: 363.4 KB Downloaded parking_lot v0.12.1 Downloading 15 crates, remaining bytes: 347.0 KB Downloaded signal-hook-mio v0.2.3 Downloading 14 crates, remaining bytes: 330.6 KB Downloaded signal-hook-registry v1.4.1 Downloading 13 crates, remaining bytes: 314.3 KB Downloaded getrandom v0.2.14 Downloading 12 crates, remaining bytes: 293.7 KB Downloaded once_cell v1.19.0 Downloading 11 crates, remaining bytes: 277.4 KB Downloaded ahash v0.8.11 Downloading 10 crates, remaining bytes: 261.0 KB Downloaded crossbeam-channel v0.5.12 Downloading 9 crates, remaining bytes: 244.6 KB Downloaded enum-map-derive v0.17.0 Downloading 8 crates, remaining bytes: 228.2 KB Downloaded errno v0.3.8 Downloading 7 crates, remaining bytes: 211.9 KB Downloaded equivalent v1.0.1 Downloading 6 crates, remaining bytes: 191.3 KB Downloaded memchr v2.7.2 Downloading 5 crates, remaining bytes: 175.0 KB Downloaded rustversion v1.0.15 Downloading 4 crates, remaining bytes: 158.6 KB Downloaded signal-hook v0.3.17 Downloading 3 crates, remaining bytes: 142.2 KB Downloaded trycmd v0.15.1 Downloading 2 crates, remaining bytes: 125.8 KB Downloaded unicode-width v0.1.11 Downloading 1 crate, remaining bytes: 109.5 KB Downloaded linux-raw-sys v0.4.13 Downloading 0 crates, extracting linux-raw-sys ... Downloaded 175 crates (12.6 MB) in 1.69s (largest was `linux-raw-sys` at 1.5 MB) ==> Starting build()... Compiling autocfg v1.2.0 Compiling proc-macro2 v1.0.79 Compiling unicode-ident v1.0.12 Compiling libc v0.2.153 Compiling libm v0.2.8 Compiling cfg-if v1.0.0 Compiling version_check v0.9.4 Compiling syn v1.0.109 Building [ ] 0/193: cfg-if, autocfg, unicode-... Compiling fnv v1.0.7 Building [ ] 1/193: autocfg, unicode-ident, l... Compiling memchr v2.7.2 Building [ ] 2/193: autocfg, unicode-ident, l... Compiling serde v1.0.197 Building [ ] 3/193: autocfg, libm(build.rs), ... Building [ ] 4/193: autocfg, proc-macro2(buil... Building [ ] 5/193: autocfg, proc-macro2(buil... Compiling ident_case v1.0.1 Building [ ] 6/193: autocfg, proc-macro2(buil... Building [ ] 7/193: autocfg, serde(build.rs),... Building [> ] 8/193: autocfg, serde(build.rs),... Building [> ] 9/193: autocfg, serde(build.rs),... Building [> ] 10/193: autocfg, serde(build), li... Compiling itoa v1.0.11 Building [> ] 11/193: autocfg, serde(build), li... Compiling bytemuck v1.15.0 Building [> ] 12/193: autocfg, bytemuck, libm, ... Building [> ] 13/193: autocfg, bytemuck, libm, ... Compiling log v0.4.21 Building [=> ] 15/193: autocfg, log, bytemuck, l... Compiling num-traits v0.2.18 Building [=> ] 16/193: log, bytemuck, libc, libm... Compiling num-rational v0.4.1 Building [=> ] 17/193: log, num-rational(build.r... Compiling matrixmultiply v0.3.8 Building [=> ] 18/193: log, num-rational(build.r... Building [=> ] 19/193: num-traits(build), log, n... Building [=> ] 20/193: num-traits(build), log, m... Compiling ppv-lite86 v0.2.17 Building [=> ] 21/193: ppv-lite86, num-traits(bu... Compiling paste v1.0.14 Building [=> ] 22/193: ppv-lite86, num-traits(bu... Compiling crossbeam-utils v0.8.19 Building [==> ] 23/193: ppv-lite86, num-traits(bu... Compiling quote v1.0.36 Building [==> ] 24/193: ppv-lite86, crossbeam-uti... Building [==> ] 25/193: ppv-lite86, crossbeam-uti... Compiling lazy_static v1.4.0 Building [==> ] 26/193: ppv-lite86, num-traits, l... Building [==> ] 27/193: num-traits, lazy_static, ... Building [==> ] 28/193: paste(build), num-traits,... Building [==> ] 29/193: paste(build), num-traits,... Compiling aho-corasick v1.1.3 Building [===> ] 30/193: num-traits, libc, libm, m... Compiling safe_arch v0.7.1 Building [===> ] 31/193: safe_arch, num-traits, li... Compiling lock_api v0.4.11 Building [===> ] 32/193: lock_api(build.rs), num-t... Compiling syn v2.0.58 Building [===> ] 33/193: syn, num-traits, libc, li... Building [===> ] 34/193: syn, num-traits, libc, li... Compiling ahash v0.8.11 Building [===> ] 35/193: syn, ahash(build.rs), num... Compiling getrandom v0.2.14 Building [===> ] 36/193: syn, ahash(build.rs), num... Compiling rand_core v0.6.4 Building [===> ] 37/193: syn, num-traits, rand_cor... Compiling signal-hook v0.3.17 Building [====> ] 38/193: syn, num-traits, rand_cor... Compiling rawpointer v0.2.1 Building [====> ] 39/193: syn, rawpointer, num-trai... Compiling regex-syntax v0.8.3 Building [====> ] 40/193: syn, regex-syntax, num-tr... Compiling rand_chacha v0.3.1 Building [====> ] 41/193: syn, rand_chacha, regex-s... Compiling semver v0.1.20 Building [====> ] 42/193: syn, rand_chacha, regex-s... Compiling rustversion v1.0.15 Building [====> ] 43/193: syn, rand_chacha, regex-s... Compiling num-integer v0.1.46 Building [====> ] 44/193: syn, rand_chacha, num-int... Compiling num-complex v0.4.5 Building [=====> ] 45/193: syn, rand_chacha, num-int... Compiling smallvec v1.13.2 Building [=====> ] 46/193: syn, rand_chacha, num-int... Building [=====> ] 47/193: syn, rand_chacha, num-int... Compiling parking_lot_core v0.9.9 Building [=====> ] 48/193: syn, rand_chacha, regex-s... Compiling powerfmt v0.2.0 Building [=====> ] 49/193: syn, rand_chacha, regex-s... Compiling typenum v1.17.0 Building [=====> ] 50/193: syn, regex-syntax, num-co... Building [=====> ] 51/193: syn, regex-syntax, num-ra... Compiling deranged v0.3.11 Building [======> ] 52/193: syn, regex-syntax, num-ra... Compiling num-iter v0.1.44 Building [======> ] 53/193: syn, regex-syntax, num-it... Building [======> ] 54/193: syn, regex-syntax, num-ra... Compiling approx v0.5.1 Building [======> ] 55/193: syn, regex-syntax, num-ra... Compiling rustc_version v0.1.7 Building [======> ] 56/193: syn, regex-syntax, num-ra... Compiling rand v0.8.5 Building [======> ] 58/193: syn, regex-syntax, num-ra... Building [======> ] 59/193: syn, regex-syntax, num-ra... Building [=======> ] 60/193: syn, regex-syntax, num-ra... Compiling regex-automata v0.4.6 Building [=======> ] 61/193: syn, regex-syntax, num-ra... Building [=======> ] 62/193: syn, regex-syntax, ahash(... Compiling signal-hook-registry v1.4.1 Building [=======> ] 63/193: syn, signal-hook-registry... Compiling darling_core v0.20.8 Building [=======> ] 64/193: syn, signal-hook-registry... Building [=======> ] 65/193: syn, regex-syntax, darlin... Compiling wide v0.7.15 Building [=======> ] 66/193: syn, wide, regex-syntax, ... Building [========> ] 67/193: syn, wide, regex-syntax, ... Building [========> ] 68/193: syn, wide, crossbeam-util... Compiling utf8parse v0.2.1 Building [========> ] 69/193: syn, wide, crossbeam-util... Compiling thiserror v1.0.58 Building [========> ] 70/193: syn, wide, crossbeam-util... Compiling zerocopy v0.7.32 Building [========> ] 71/193: syn, wide, crossbeam-util... Compiling feature-probe v0.1.1 Building [========> ] 72/193: syn, wide, crossbeam-util... Compiling once_cell v1.19.0 Building [========> ] 73/193: syn, wide, regex-syntax, ... Compiling num-conv v0.1.0 Compiling cc v1.0.92 Building [=========> ] 75/193: syn, wide, cc, regex-synt... Compiling time-core v0.1.2 Building [=========> ] 76/193: syn, wide, cc, regex-synt... Compiling stable_deref_trait v1.2.0 Building [=========> ] 77/193: syn, wide, cc, regex-synt... Compiling serde_derive v1.0.197 Building [=========> ] 78/193: wide, cc, regex-syntax, d... Compiling enum-map-derive v0.17.0 Building [=========> ] 79/193: wide, cc, regex-syntax, d... Compiling enum-map v2.7.3 Building [=========> ] 80/193: enum-map, wide, cc, regex... Compiling darling_macro v0.20.8 Building [=========> ] 81/193: enum-map, wide, cc, regex... Compiling num_threads v0.1.7 Building [==========> ] 82/193: enum-map, wide, cc, regex... Compiling scopeguard v1.2.0 Building [==========> ] 83/193: wide, cc, regex-syntax, s... Building [==========> ] 84/193: wide, cc, regex-syntax, d... Compiling time v0.3.35 Building [==========> ] 85/193: cc, regex-syntax, darling... Compiling cmake v0.1.50 Building [==========> ] 86/193: cc, regex-syntax, darling... Compiling thiserror-impl v1.0.58 Building [==========> ] 87/193: thiserror-impl, cc, regex... Compiling owning_ref v0.4.1 Building [==========> ] 88/193: thiserror-impl, cc, regex... Compiling darling v0.20.8 Building [==========> ] 89/193: thiserror-impl, cc, regex... Compiling enumset_derive v0.8.1 Building [===========> ] 90/193: thiserror-impl, cc, regex... Compiling bv v0.11.1 Building [===========> ] 91/193: thiserror-impl, cc, regex... Building [===========> ] 92/193: thiserror-impl, cc, regex... Compiling simba v0.6.0 Building [===========> ] 93/193: thiserror-impl, regex-syn... Building [===========> ] 94/193: thiserror-impl, thiserror... Compiling crossbeam-channel v0.5.12 Building [===========> ] 95/193: thiserror-impl, regex-syn... Compiling enumset v1.1.3 Building [===========> ] 96/193: thiserror-impl, regex-syn... Compiling anstyle-parse v0.2.3 Building [============> ] 97/193: anstyle-parse, regex-synt... Compiling regex v1.10.4 Building [============> ] 98/193: anstyle-parse, regex-synt... Compiling nalgebra-macros v0.1.0 Building [============> ] 99/193: anstyle-parse, regex-synt... Building [===========> ] 100/193: signal-hook, regex-syntax... Compiling rand_distr v0.4.3 Building [============> ] 101/193: signal-hook, regex-syntax... Building [============> ] 102/193: signal-hook, regex-syntax... Compiling newtype_derive v0.1.6 Building [============> ] 103/193: signal-hook, regex-syntax... Building [============> ] 104/193: signal-hook, regex-syntax... Building [============> ] 105/193: regex-syntax, serde, rege... Compiling num v0.4.1 Building [============> ] 106/193: regex-syntax, serde, rege... Building [============> ] 107/193: regex-syntax, serde, rege... Compiling mio v0.8.11 Building [============> ] 108/193: regex-syntax, serde, rege... Compiling rustfft v6.2.0 Building [=============> ] 109/193: rustfft(build.rs), regex-... Compiling anstyle v1.0.6 Building [=============> ] 110/193: rustfft(build.rs), serde,... Compiling hashbrown v0.14.3 Building [=============> ] 111/193: serde, anstyle, hashbrown... Compiling heck v0.4.1 Building [=============> ] 112/193: heck, serde, anstyle, has... Compiling strength_reduce v0.2.4 Building [=============> ] 113/193: heck, strength_reduce, se... Compiling anstyle-query v1.0.2 Building [=============> ] 114/193: strength_reduce, serde, h... Compiling anyhow v1.0.82 Building [=============> ] 115/193: strength_reduce, serde, h... Compiling colorchoice v1.0.0 Building [==============> ] 116/193: strength_reduce, serde, c... Compiling ryu v1.0.17 Building [==============> ] 117/193: serde, colorchoice, hashb... Compiling xi-unicode v0.3.0 Building [==============> ] 118/193: serde, hashbrown, ryu, re... Compiling equivalent v1.0.1 Building [==============> ] 119/193: serde, hashbrown, ryu, re... Compiling unicode-width v0.1.11 Building [==============> ] 120/193: unicode-width, serde, has... Compiling unicode-segmentation v1.11.0 Building [==============> ] 121/193: unicode-segmentation, ser... Compiling indexmap v2.2.6 Building [==============> ] 122/193: unicode-segmentation, ser... Compiling anstream v0.6.13 Building [==============> ] 123/193: unicode-segmentation, ser... Building [===============> ] 124/193: unicode-segmentation, ser... Compiling transpose v0.2.3 Building [===============> ] 125/193: unicode-segmentation, tra... Compiling cursive_core v0.3.7 Building [===============> ] 126/193: unicode-segmentation, cur... Compiling strum_macros v0.25.3 Building [===============> ] 127/193: unicode-segmentation, cur... Compiling signal-hook-mio v0.2.3 Building [===============> ] 128/193: unicode-segmentation, cur... Building [===============> ] 129/193: cursive_core, strum_macro... Compiling parking_lot v0.12.1 Building [===============> ] 130/193: cursive_core, strum_macro... Building [===============> ] 131/193: cursive_core, strum_macro... Building [================> ] 132/193: cursive_core, strum_macro... Compiling biodiff-wfa2-sys v2.3.5 (/build/biodiff/src/biodiff-1.2.1/biodiff-wfa2-sys) Building [================> ] 133/193: cursive_core, strum_macro... Building [================> ] 134/193: cursive_core, strum_macro... Compiling derive-new v0.5.9 Building [================> ] 135/193: derive-new, cursive_core,... Compiling primal-check v0.3.3 Building [================> ] 136/193: derive-new, cursive_core,... Compiling csv-core v0.1.11 Building [================> ] 137/193: derive-new, cursive_core,... Compiling byteorder v1.5.0 Building [================> ] 138/193: derive-new, cursive_core,... Compiling bitflags v1.3.2 Building [=================> ] 139/193: cursive_core, strum_macro... Compiling clap_lex v0.7.0 Building [=================> ] 140/193: cursive_core, strum_macro... Compiling serde_json v1.0.115 Building [=================> ] 141/193: cursive_core, strum_macro... Compiling heck v0.5.0 Building [=================> ] 142/193: cursive_core, strum_macro... Compiling fixedbitset v0.4.2 Building [=================> ] 143/193: fixedbitset, cursive_core... Compiling either v1.10.0 Building [=================> ] 144/193: fixedbitset, cursive_core... Compiling bit-vec v0.6.3 Building [=================> ] 145/193: fixedbitset, cursive_core... Compiling option-ext v0.2.0 Building [=================> ] 146/193: fixedbitset, cursive_core... Compiling dirs-sys v0.4.1 Building [==================> ] 147/193: fixedbitset, cursive_core... Compiling bit-set v0.5.3 Building [==================> ] 148/193: fixedbitset, cursive_core... Compiling nalgebra v0.29.0 Building [==================> ] 149/193: fixedbitset, cursive_core... Compiling itertools v0.11.0 Building [==================> ] 150/193: itertools, cursive_core, ... Compiling clap_derive v4.5.4 Building [==================> ] 151/193: itertools, cursive_core, ... Compiling bio-types v1.0.1 Building [==================> ] 152/193: itertools, cursive_core, ... Compiling petgraph v0.6.4 Building [==================> ] 153/193: itertools, cursive_core, ... Building [==================> ] 154/193: itertools, cursive_core, ... Compiling vec_map v0.8.2 Building [===================> ] 155/193: itertools, cursive_core, ... Compiling csv v1.3.0 Building [===================> ] 156/193: itertools, cursive_core, ... Compiling multimap v0.9.1 Building [===================> ] 157/193: cursive_core, nalgebra, p... Building [===================> ] 158/193: cursive_core, nalgebra, p... Compiling fxhash v0.2.1 Building [===================> ] 159/193: cursive_core, nalgebra, p... Compiling clap_builder v4.5.2 Building [===================> ] 160/193: cursive_core, nalgebra, p... Compiling crossterm v0.25.0 Building [===================> ] 161/193: cursive_core, nalgebra, p... Building [===================> ] 162/193: cursive_core, nalgebra, p... Building [====================> ] 163/193: cursive_core, nalgebra, c... Building [====================> ] 164/193: cursive_core, nalgebra, c... Building [====================> ] 165/193: cursive_core, nalgebra, c... Compiling ndarray v0.15.6 Building [====================> ] 166/193: cursive_core, nalgebra, c... Compiling itertools-num v0.1.3 Building [====================> ] 167/193: cursive_core, nalgebra, i... Compiling ordered-float v3.9.2 Building [====================> ] 168/193: ordered-float, cursive_co... Compiling triple_accel v0.4.0 Building [====================> ] 169/193: cursive_core, nalgebra, c... Compiling strum v0.25.0 Building [=====================> ] 170/193: cursive_core, nalgebra, c... Compiling bytecount v0.6.7 Building [=====================> ] 171/193: cursive_core, nalgebra, b... Compiling editdistancek v1.0.2 Building [=====================> ] 172/193: cursive_core, nalgebra, c... Compiling custom_derive v0.1.7 Building [=====================> ] 173/193: cursive_core, nalgebra, c... Compiling realfft v3.3.0 Building [=====================> ] 174/193: cursive_core, realfft, na... Compiling clap v4.5.4 Building [=====================> ] 175/193: cursive_core, nalgebra, c... Compiling cursive v0.20.0 Building [=====================> ] 176/193: cursive_core, nalgebra, c... Building [=====================> ] 177/193: cursive_core, nalgebra, c... Building [======================> ] 178/193: cursive_core, nalgebra, s... Compiling cursive_buffered_backend v0.6.1 Building [======================> ] 179/193: cursive_core, nalgebra, s... Compiling dirs v5.0.1 Building [======================> ] 180/193: cursive_core, nalgebra, s... Compiling hexagex v0.2.3 (/build/biodiff/src/biodiff-1.2.1/hexagex) Building [======================> ] 181/193: cursive_core, nalgebra, s... Building [======================> ] 182/193: cursive_core, nalgebra, s... Building [======================> ] 183/193: cursive_core, nalgebra, c... Building [======================> ] 184/193: cursive_core, nalgebra, c... Building [======================> ] 185/193: cursive_core, nalgebra, c... Building [=======================> ] 186/193: cursive_core, nalgebra, c... Building [=======================> ] 187/193: cursive_core, nalgebra Building [=======================> ] 188/193: nalgebra Compiling statrs v0.16.0 Building [=======================> ] 188/193: nalgebra, statrs Building [=======================> ] 189/193: statrs Compiling bio v1.6.0 Building [=======================> ] 189/193: statrs, bio Building [=======================> ] 190/193: bio Compiling biodiff v1.2.1 (/build/biodiff/src/biodiff-1.2.1) Building [=======================> ] 191/193: biodiff(bin) Building [=======================> ] 191/193: git-biodiff(bin), biodiff... Building [=======================> ] 192/193: biodiff(bin) Finished release [optimized] target(s) in 2m 28s ==> Entering fakeroot environment... ==> Starting package()... ==> Tidying install... -> Removing libtool files... -> Purging unwanted files... -> Removing static library files... -> Stripping unneeded symbols from binaries and libraries... -> Compressing man and info pages... ==> Checking for packaging issues... ==> Creating package "biodiff"... -> Generating .PKGINFO file... -> Generating .BUILDINFO file... -> Generating .MTREE file... -> Compressing package... ==> Leaving fakeroot environment. ==> Finished making: biodiff 1.2.1-1 (Sun Apr 21 09:21:41 2024) ==> Cleaning up...