==> Synchronizing chroot copy [/home/leming/armv8/root] -> [leming]...done
==> Making package: coordgen 3.0.2-3 (Tue Oct 28 07:22:44 2025)
==> Retrieving sources...
-> Cloning coordgenlibs git repo...
Cloning into bare repository '/home/leming/work/coordgen/coordgenlibs'...
-> Found fix-cmake.patch
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
coordgenlibs ... Skipped
fix-cmake.patch ... Passed
==> Making package: coordgen 3.0.2-3 (Tue Oct 28 07:22:53 2025)
==> Checking runtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
Packages (2) boost-libs-1.89.0-2 maeparser-1.3.3-3
Total Download Size: 2.53 MiB
Total Installed Size: 13.53 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
boost-libs-1.89.0-2-aarch64 downloading...
maeparser-1.3.3-3-aarch64 downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing boost-libs...
Optional dependencies for boost-libs
openmpi: for mpi support
installing maeparser...
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
[?25h==> Checking buildtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
Packages (12) cppdap-1.58.0-2 hicolor-icon-theme-0.18-1 jsoncpp-1.9.6-3
libuv-1.51.0-1 perl-error-0.17030-2 perl-mailtools-2.22-2
perl-timedate-2.33-8 rhash-1.4.6-1 zlib-ng-2.2.5-1
boost-1.89.0-2 cmake-4.1.2-1 git-2.51.2-2
Total Download Size: 23.45 MiB
Total Installed Size: 337.54 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
boost-1.89.0-2-aarch64 downloading...
git-2.51.2-2-aarch64 downloading...
zlib-ng-2.2.5-1-aarch64 downloading...
perl-mailtools-2.22-2-any downloading...
perl-timedate-2.33-8-any downloading...
perl-error-0.17030-2-any downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing boost...
Optional dependencies for boost
python: for python bindings [installed]
installing cppdap...
installing hicolor-icon-theme...
installing jsoncpp...
Optional dependencies for jsoncpp
jsoncpp-doc: documentation
installing libuv...
installing rhash...
installing cmake...
Optional dependencies for cmake
make: for unix Makefile generator [installed]
ninja: for ninja generator
qt6-base: cmake-gui
installing perl-error...
installing perl-timedate...
installing perl-mailtools...
installing zlib-ng...
installing git...
Optional dependencies for git
git-zsh-completion: upstream zsh completion
tk: gitk and git gui
openssh: ssh transport and crypto
man: show help with `git command --help`
perl-libwww: git svn
perl-term-readkey: git svn and interactive.singlekey setting
perl-io-socket-ssl: git send-email TLS support
perl-authen-sasl: git send-email TLS support
perl-cgi: gitweb (web interface) support
python: git svn & git p4 [installed]
subversion: git svn
org.freedesktop.secrets: keyring credential helper
libsecret: libsecret credential helper [installed]
less: the default pager for git [installed]
:: Running post-transaction hooks...
(1/4) Creating system user accounts...
Creating group 'git' with GID 970.
Creating user 'git' (git daemon user) with UID 970 and GID 970.
(2/4) Reloading system manager configuration...
Skipped: Current root is not booted.
(3/4) Arming ConditionNeedsUpdate...
(4/4) Checking for old perl modules...
[?25h==> Retrieving sources...
-> Found fix-cmake.patch
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Creating working copy of coordgenlibs git repo...
Cloning into 'coordgenlibs'...
done.
Switched to a new branch 'makepkg'
==> Starting prepare()...
patching file CMakeLists.txt
==> Starting build()...
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The C compiler identification is GNU 14.2.1
-- The CXX compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib/distcc/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib/distcc/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- maeparser include dir set as '/usr/include'
-- maeparser libraries set as '/usr/lib/libmaeparser.so'
-- Found compiled maeparser library at
CMake Warning (dev) at CMakeLists.txt:78 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.89.0/BoostConfig.cmake (found version "1.89.0")
CMake Warning (dev) at example_dir/CMakeLists.txt:13 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.89.0/BoostConfig.cmake (found version "1.89.0") found components: filesystem
CMake Warning (dev) at test/CMakeLists.txt:14 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.89.0/BoostConfig.cmake (found version "1.89.0") found components: filesystem unit_test_framework
-- Configuring done (2.1s)
-- Generating done (0.1s)
-- Build files have been written to: /build/coordgen/src/build
[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o
[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o
[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o
[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o
[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o
[ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o
[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o
[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o
[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o
[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o
[ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o
[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o
[ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o
[ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o
[ 71%] Linking CXX shared library libcoordgen.so
[ 71%] Built target coordgen
[ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o
[ 85%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o
[ 85%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o
[ 90%] Linking CXX executable example
[ 90%] Built target example
[ 95%] Linking CXX executable test_smilesparser
[ 95%] Built target test_smilesparser
[100%] Linking CXX executable test_coordgen
[100%] Built target test_coordgen
==> Entering fakeroot environment...
==> Starting package()...
-- Install configuration: ""
-- Installing: /build/coordgen/pkg/coordgen/usr/lib/libcoordgen.so.3.0.2
-- Installing: /build/coordgen/pkg/coordgen/usr/lib/libcoordgen.so.3
-- Installing: /build/coordgen/pkg/coordgen/usr/lib/libcoordgen.so
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/CoordgenConfig.hpp
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/CoordgenFragmentBuilder.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/CoordgenFragmenter.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/CoordgenMacrocycleBuilder.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/CoordgenMinimizer.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerAtom.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerBendInteraction.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerBond.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerClashInteraction.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerEZConstrainInteraction.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerFragment.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizer.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerInteraction.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerMarchingSquares.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerMaths.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerMolecule.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerResidue.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerResidueInteraction.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerRing.h
-- Installing: /build/coordgen/pkg/coordgen/usr/include/coordgen/sketcherMinimizerStretchInteraction.h
-- Installing: /build/coordgen/pkg/coordgen/usr/lib/cmake/coordgen/coordgen-config.cmake
-- Installing: /build/coordgen/pkg/coordgen/usr/lib/cmake/coordgen/coordgen-config-noconfig.cmake
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> WARNING: Package contains reference to $srcdir
usr/lib/libcoordgen.so.3.0.2
==> Creating package "coordgen"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: coordgen 3.0.2-3 (Tue Oct 28 07:23:28 2025)
==> Cleaning up...