==> Synchronizing chroot copy [/home/leming/armv8/root] -> [leming]...done
==> Making package: genxrdpattern 1.1-4 (Tue Jul 2 18:49:47 2024)
==> Retrieving sources...
-> Cloning genXrdPattern git repo...
Cloning into bare repository '/home/leming/work/genxrdpattern/genXrdPattern'...
-> Found objcryst.tgz
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
genXrdPattern ... Skipped
objcryst.tgz ... Passed
==> Making package: genxrdpattern 1.1-4 (Tue 02 Jul 2024 06:49:54 PM MDT)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
Packages (10) cppdap-1.58.0-2 hicolor-icon-theme-0.18-1 jsoncpp-1.9.5-2
libuv-1.48.0-2 perl-error-0.17029-5 perl-mailtools-2.21-7
perl-timedate-2.33-5 rhash-1.4.4-1 cmake-3.29.6-1 git-2.45.2-1
Total Installed Size: 136.87 MiB
:: Proceed with installation? [Y/n]
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing cppdap...
installing hicolor-icon-theme...
installing jsoncpp...
Optional dependencies for jsoncpp
jsoncpp-doc: documentation
installing libuv...
installing rhash...
installing cmake...
Optional dependencies for cmake
make: for unix Makefile generator [installed]
ninja: for ninja generator
qt6-base: cmake-gui
installing perl-error...
installing perl-timedate...
installing perl-mailtools...
installing git...
Optional dependencies for git
tk: gitk and git gui
openssh: ssh transport and crypto
perl-libwww: git svn
perl-term-readkey: git svn and interactive.singlekey setting
perl-io-socket-ssl: git send-email TLS support
perl-authen-sasl: git send-email TLS support
perl-mediawiki-api: git mediawiki support
perl-datetime-format-iso8601: git mediawiki support
perl-lwp-protocol-https: git mediawiki https support
perl-cgi: gitweb (web interface) support
python: git svn & git p4 [installed]
subversion: git svn
org.freedesktop.secrets: keyring credential helper
libsecret: libsecret credential helper [installed]
:: Running post-transaction hooks...
(1/1) Warn about old perl modules
[?25h==> Retrieving sources...
-> Found objcryst.tgz
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Creating working copy of genXrdPattern git repo...
Cloning into 'genXrdPattern'...
done.
Switched to a new branch 'makepkg'
-> Extracting objcryst.tgz with bsdtar
==> Starting prepare()...
==> Starting build()...
make -f gnu.mak wxcryst=0 opengl=0 fftw=0 cod=0 debug= -C src Fox-nogui
make[1]: Entering directory '/build/genxrdpattern/src/objcryst/Fox/src'
cd /build/genxrdpattern/src/objcryst/Fox/src/../..
make -f nm_gnu.mak -C /build/genxrdpattern/src/objcryst/Fox/src/../../newmat libnewmat.a
make[2]: Entering directory '/build/genxrdpattern/src/objcryst/newmat'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat1.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat2.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat3.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat4.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat5.cpp
newmat5.cpp: In destructor 'NEWMAT::MatrixInput::~MatrixInput()':
newmat5.cpp:490:14: warning: 'throw' will always call 'terminate' [-Wterminate]
newmat5.cpp:490:14: note: in C++11 destructors default to 'noexcept'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat6.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat7.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat8.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmatex.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c bandmat.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c submat.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c myexcept.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c cholesky.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c evalue.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c fft.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c hholder.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c jacobi.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newfft.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c sort.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c svd.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c nm_misc.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmatrm.cpp
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -static -c newmat9.cpp
ar -cr libnewmat.a newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmatex.o bandmat.o submat.o myexcept.o cholesky.o evalue.o fft.o hholder.o jacobi.o newfft.o sort.o svd.o nm_misc.o newmatrm.o newmat9.o
ranlib libnewmat.a
make[2]: Leaving directory '/build/genxrdpattern/src/objcryst/newmat'
mkdir -p /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/lib/
cp /build/genxrdpattern/src/objcryst/Fox/src/../../newmat/libnewmat.a /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/lib/
mkdir -p /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/newmat
cp /build/genxrdpattern/src/objcryst/Fox/src/../../newmat/*.h /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/newmat/
#rm -Rf /build/genxrdpattern/src/objcryst/Fox/src/../../newmat
mkdir -p /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/lib/ /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/
cd /build/genxrdpattern/src/objcryst/Fox/src/../..
make -f gnu.mak -C /build/genxrdpattern/src/objcryst/Fox/src/../../cctbx install
make[2]: Entering directory '/build/genxrdpattern/src/objcryst/cctbx'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/basic.cpp -o cctbx/eltbx/basic.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/icsd_radii.cpp -o cctbx/eltbx/icsd_radii.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/covalent_radii.cpp -o cctbx/eltbx/covalent_radii.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/tiny_pse.cpp -o cctbx/eltbx/tiny_pse.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/fp_fdp.cpp -o cctbx/eltbx/fp_fdp.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/neutron.cpp -o cctbx/eltbx/neutron.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/wavelengths.cpp -o cctbx/eltbx/wavelengths.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/xray_scattering/it1992.cpp -o cctbx/eltbx/xray_scattering/it1992.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/cctbx/eltbx/xray_scattering/form_factor.h:4,
from include/cctbx/eltbx/xray_scattering/gaussian.h:4,
from include/cctbx/eltbx/xray_scattering.h:5,
from cctbx/eltbx/xray_scattering/it1992.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/cctbx/error.h:16,
from include/cctbx/eltbx/basic.h:4,
from include/cctbx/eltbx/xray_scattering.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/xray_scattering/n_gaussian.cpp -o cctbx/eltbx/xray_scattering/n_gaussian.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/cctbx/eltbx/xray_scattering/form_factor.h:4,
from include/cctbx/eltbx/xray_scattering/gaussian.h:4,
from include/cctbx/eltbx/xray_scattering/n_gaussian.h:4,
from cctbx/eltbx/xray_scattering/n_gaussian.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/xray_scattering/wk1995.cpp -o cctbx/eltbx/xray_scattering/wk1995.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/cctbx/eltbx/xray_scattering/form_factor.h:4,
from include/cctbx/eltbx/xray_scattering/gaussian.h:4,
from include/cctbx/eltbx/xray_scattering.h:5,
from cctbx/eltbx/xray_scattering/wk1995.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/cctbx/error.h:16,
from include/cctbx/eltbx/basic.h:4,
from include/cctbx/eltbx/xray_scattering.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke.cpp -o cctbx/eltbx/henke.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_25_36.cpp -o cctbx/eltbx/henke_tables_25_36.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_61_72.cpp -o cctbx/eltbx/henke_tables_61_72.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_01_12.cpp -o cctbx/eltbx/henke_tables_01_12.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_37_48.cpp -o cctbx/eltbx/henke_tables_37_48.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_73_84.cpp -o cctbx/eltbx/henke_tables_73_84.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_13_24.cpp -o cctbx/eltbx/henke_tables_13_24.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_49_60.cpp -o cctbx/eltbx/henke_tables_49_60.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/henke_tables_85_92.cpp -o cctbx/eltbx/henke_tables_85_92.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki.cpp -o cctbx/eltbx/sasaki.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_25_36.cpp -o cctbx/eltbx/sasaki_tables_25_36.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_61_72.cpp -o cctbx/eltbx/sasaki_tables_61_72.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_01_12.cpp -o cctbx/eltbx/sasaki_tables_01_12.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_37_48.cpp -o cctbx/eltbx/sasaki_tables_37_48.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_73_82.cpp -o cctbx/eltbx/sasaki_tables_73_82.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_13_24.cpp -o cctbx/eltbx/sasaki_tables_13_24.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/eltbx/sasaki_tables_49_60.cpp -o cctbx/eltbx/sasaki_tables_49_60.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/bricks.cpp -o cctbx/sgtbx/bricks.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/space_group_type.h:4,
from include/cctbx/sgtbx/brick.h:4,
from cctbx/sgtbx/bricks.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/miller.cpp -o cctbx/sgtbx/miller.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from cctbx/sgtbx/miller.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/select_generators.cpp -o cctbx/sgtbx/select_generators.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/select_generators.h:4,
from cctbx/sgtbx/select_generators.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/tr_group.cpp -o cctbx/sgtbx/tr_group.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from cctbx/sgtbx/tr_group.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/change_of_basis_op.cpp -o cctbx/sgtbx/change_of_basis_op.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from cctbx/sgtbx/change_of_basis_op.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/reciprocal_space_asu.cpp -o cctbx/sgtbx/reciprocal_space_asu.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/space_group_type.h:4,
from include/cctbx/sgtbx/reciprocal_space_asu.h:4,
from cctbx/sgtbx/reciprocal_space_asu.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/seminvariant.cpp -o cctbx/sgtbx/seminvariant.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/seminvariant.h:4,
from cctbx/sgtbx/seminvariant.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/tr_vec.cpp -o cctbx/sgtbx/tr_vec.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from cctbx/sgtbx/tr_vec.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/find_affine.cpp -o cctbx/sgtbx/find_affine.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/find_affine.h:4,
from cctbx/sgtbx/find_affine.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/reciprocal_space_ref_asu.cpp -o cctbx/sgtbx/reciprocal_space_ref_asu.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/cctbx/miller.h:8,
from include/cctbx/sgtbx/reciprocal_space_reference_asu.h:5,
from cctbx/sgtbx/reciprocal_space_ref_asu.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/cctbx/error.h:16,
from include/cctbx/sgtbx/reciprocal_space_reference_asu.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/site_symmetry.cpp -o cctbx/sgtbx/site_symmetry.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/site_constraints.h:4,
from include/cctbx/sgtbx/site_symmetry.h:4,
from include/cctbx/sgtbx/site_symmetry_table.h:4,
from cctbx/sgtbx/site_symmetry.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from include/boost/smart_ptr/shared_array.hpp:28,
from include/boost/shared_array.hpp:17,
from include/cctbx/sgtbx/tensor_rank_2.h:9,
from include/cctbx/sgtbx/site_symmetry.h:5:
include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from include/scitbx/array_family/detail/misc.h:5,
from include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/utils.cpp -o cctbx/sgtbx/utils.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/group_codes.cpp -o cctbx/sgtbx/group_codes.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/rot_mx.cpp -o cctbx/sgtbx/rot_mx.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from cctbx/sgtbx/rot_mx.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/space_group.cpp -o cctbx/sgtbx/space_group.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from cctbx/sgtbx/space_group.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/wyckoff.cpp -o cctbx/sgtbx/wyckoff.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/site_constraints.h:4,
from include/cctbx/sgtbx/site_symmetry.h:4,
from include/cctbx/sgtbx/wyckoff.h:4,
from cctbx/sgtbx/wyckoff.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from include/boost/smart_ptr/shared_array.hpp:28,
from include/boost/shared_array.hpp:17,
from include/cctbx/sgtbx/tensor_rank_2.h:9,
from include/cctbx/sgtbx/site_symmetry.h:5:
include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from include/scitbx/array_family/detail/misc.h:5,
from include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/hall_in.cpp -o cctbx/sgtbx/hall_in.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from cctbx/sgtbx/hall_in.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/rot_mx_info.cpp -o cctbx/sgtbx/rot_mx_info.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rot_mx_info.h:4,
from cctbx/sgtbx/rot_mx_info.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/space_group_type.cpp -o cctbx/sgtbx/space_group_type.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/space_group_type.h:4,
from cctbx/sgtbx/space_group_type.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/lattice_symmetry.cpp -o cctbx/sgtbx/lattice_symmetry.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/lattice_symmetry.h:4,
from cctbx/sgtbx/lattice_symmetry.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/row_echelon_solve.cpp -o cctbx/sgtbx/row_echelon_solve.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/row_echelon_solve.h:4,
from cctbx/sgtbx/row_echelon_solve.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/symbols.cpp -o cctbx/sgtbx/symbols.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/reference_settings.h:5,
from cctbx/sgtbx/symbols.cpp:7:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from cctbx/sgtbx/symbols.cpp:2:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6,
from cctbx/sgtbx/symbols.cpp:8:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/lattice_tr.cpp -o cctbx/sgtbx/lattice_tr.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/lattice_tr.h:4,
from cctbx/sgtbx/lattice_tr.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/rt_mx.cpp -o cctbx/sgtbx/rt_mx.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from cctbx/sgtbx/rt_mx.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/tensor_rank_2.cpp -o cctbx/sgtbx/tensor_rank_2.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/tensor_rank_2.h:4,
from cctbx/sgtbx/tensor_rank_2.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from include/boost/smart_ptr/shared_array.hpp:28,
from include/boost/shared_array.hpp:17,
from include/cctbx/sgtbx/tensor_rank_2.h:9:
include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from include/scitbx/array_family/detail/misc.h:5,
from include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/reference_settings/hall_symbol_table.cpp -o cctbx/sgtbx/reference_settings/hall_symbol_table.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/reference_settings.h:5,
from cctbx/sgtbx/reference_settings/hall_symbol_table.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/reference_settings/normalizer.cpp -o cctbx/sgtbx/reference_settings/normalizer.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/reference_settings.h:5,
from cctbx/sgtbx/reference_settings/normalizer.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from cctbx/sgtbx/reference_settings/normalizer.cpp:2:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/reference_settings.h:5,
from cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/sgtbx/reference_settings/wyckoff.cpp -o cctbx/sgtbx/reference_settings/wyckoff.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/reference_settings.h:5,
from cctbx/sgtbx/reference_settings/wyckoff.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/asu.cpp -o cctbx/miller/asu.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/cctbx/hendrickson_lattman.h:4,
from include/cctbx/miller/sym_equiv.h:4,
from include/cctbx/miller/asu.h:4,
from cctbx/miller/asu.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/scitbx/math/bessel.h:4,
from include/cctbx/hendrickson_lattman.h:6:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/smart_ptr/shared_ptr.hpp:32,
from include/boost/shared_ptr.hpp:17,
from include/boost/format/alt_sstream.hpp:21,
from include/boost/format/internals.hpp:23,
from include/boost/format.hpp:38,
from include/boost/math/policies/error_handling.hpp:30,
from include/boost/math/special_functions/gamma.hpp:31,
from include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from include/boost/math/special_functions/bessel.hpp:17,
from include/scitbx/math/bessel.h:9:
include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from include/scitbx/array_family/detail/misc.h:5,
from include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/miller/sym_equiv.h:5:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/index_generator.cpp -o cctbx/miller/index_generator.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/cctbx/sgtbx/basic.h:4,
from include/cctbx/sgtbx/tr_vec.h:4,
from include/cctbx/sgtbx/rot_mx.h:4,
from include/cctbx/sgtbx/rt_mx.h:4,
from include/cctbx/sgtbx/change_of_basis_op.h:4,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/space_group_type.h:4,
from include/cctbx/sgtbx/reciprocal_space_asu.h:4,
from include/cctbx/miller/index_generator.h:4,
from cctbx/miller/index_generator.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/match_bijvoet_mates.cpp -o cctbx/miller/match_bijvoet_mates.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/cctbx/miller/match.h:4,
from include/cctbx/miller/match_bijvoet_mates.h:4,
from cctbx/miller/match_bijvoet_mates.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:16:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:18:20: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:31:27: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:33:20: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/sgtbx/space_group_type.h:4,
from include/cctbx/sgtbx/reciprocal_space_asu.h:4,
from include/cctbx/miller/match_bijvoet_mates.h:5:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/sym_equiv.cpp -o cctbx/miller/sym_equiv.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/cctbx/hendrickson_lattman.h:4,
from include/cctbx/miller/sym_equiv.h:4,
from cctbx/miller/sym_equiv.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/scitbx/math/bessel.h:4,
from include/cctbx/hendrickson_lattman.h:6:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/smart_ptr/shared_ptr.hpp:32,
from include/boost/shared_ptr.hpp:17,
from include/boost/format/alt_sstream.hpp:21,
from include/boost/format/internals.hpp:23,
from include/boost/format.hpp:38,
from include/boost/math/policies/error_handling.hpp:30,
from include/boost/math/special_functions/gamma.hpp:31,
from include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from include/boost/math/special_functions/bessel.hpp:17,
from include/scitbx/math/bessel.h:9:
include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from include/scitbx/array_family/detail/misc.h:5,
from include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/sgtbx/change_of_basis_op.h:6,
from include/cctbx/sgtbx/tr_group.h:4,
from include/cctbx/sgtbx/space_group.h:4,
from include/cctbx/miller/sym_equiv.h:5:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/bins.cpp -o cctbx/miller/bins.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/cctbx/miller.h:8,
from include/cctbx/miller/bins.h:4,
from cctbx/miller/bins.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/miller/bins.h:5:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/index_span.cpp -o cctbx/miller/index_span.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/cctbx/miller.h:8,
from include/cctbx/miller/index_span.h:4,
from cctbx/miller/index_span.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/miller/match_indices.cpp -o cctbx/miller/match_indices.o
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/array_family/shared_plain.h:31,
from include/scitbx/array_family/shared.h:4,
from include/cctbx/miller/match.h:4,
from include/cctbx/miller/match_indices.h:4,
from cctbx/miller/match_indices.cpp:1:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from include/scitbx/error_utils.h:4,
from include/scitbx/error.h:16,
from include/scitbx/array_family/ref.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/scitbx/array_family/ref_reductions.h:8,
from include/scitbx/array_family/tiny.h:5:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:16:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:18:20: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:31:27: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/cctbx/miller/match.h:33:20: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/uctbx/uctbx.cpp -o cctbx/uctbx/uctbx.o
In file included from include/boost/numeric/conversion/converter.hpp:16,
from include/boost/numeric/conversion/cast.hpp:32,
from include/cctbx/uctbx.h:5,
from include/cctbx/uctbx/fast_minimum_reduction.h:4,
from cctbx/uctbx/uctbx.cpp:1:
include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/functional:49,
from include/boost/numeric/conversion/converter_policies.hpp:17,
from include/boost/numeric/conversion/converter.hpp:14:
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from include/boost/optional/optional.hpp:36,
from include/boost/optional.hpp:15,
from include/cctbx/uctbx.h:6:
include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from include/boost/operators.hpp:86,
from include/scitbx/array_family/detail/ref_helpers.h:4,
from include/scitbx/array_family/ref.h:8,
from include/scitbx/array_family/tiny_plain.h:4,
from include/scitbx/array_family/tiny.h:4,
from include/scitbx/vec3.h:4,
from include/scitbx/mat3.h:6,
from include/scitbx/sym_mat3.h:4,
from include/cctbx/uctbx.h:8:
include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_algobase.h:65,
from /usr/include/c++/14.1.1/bits/specfun.h:43,
from /usr/include/c++/14.1.1/cmath:3898,
from include/cctbx/uctbx.h:4:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -pedantic -Iinclude -Wno-long-long -static -c cctbx/uctbx/spoil_optimization.cpp -o cctbx/uctbx/spoil_optimization.o
ar crs libcctbx.a cctbx/eltbx/basic.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/neutron.o cctbx/eltbx/wavelengths.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/sgtbx/bricks.o cctbx/sgtbx/miller.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/utils.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/space_group.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/symbols.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/miller/asu.o cctbx/miller/index_generator.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/sym_equiv.o cctbx/miller/bins.o cctbx/miller/index_span.o cctbx/miller/match_indices.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o
cp -f libcctbx.a ../static-libs/lib/
rm -Rf ../static-libs/include/boost ../static-libs/include/cctbx ../static-libs/include/scitbx
cp -Rf include/* ../static-libs/include/
make[2]: Leaving directory '/build/genxrdpattern/src/objcryst/cctbx'
#ln -sf /build/genxrdpattern/src/objcryst/Fox/src/../../boost /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/
#rm -Rf /build/genxrdpattern/src/objcryst/Fox/src/../../cctbx
make -f gnu.mak -C /build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/CrystVector lib
make[2]: Entering directory '/build/genxrdpattern/src/objcryst/ObjCryst/CrystVector'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/CrystVector/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/CrystVector/../../static-libs/include -DREAL=float -O2 -static -c CrystVector.cpp -o CrystVector.o
ar crs libCrystVector.a CrystVector.o
make[2]: Leaving directory '/build/genxrdpattern/src/objcryst/ObjCryst/CrystVector'
make -f gnu.mak -C /build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/Quirks lib
make[2]: Entering directory '/build/genxrdpattern/src/objcryst/ObjCryst/Quirks'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/../../static-libs/include -DREAL=float -O2 -static -c VFNStreamFormat.cpp -o VFNStreamFormat.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/../../static-libs/include -DREAL=float -O2 -static -c VFNDebug.cpp -o VFNDebug.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/../../static-libs/include -DREAL=float -O2 -static -c ci_string.cpp -o ci_string.o
ar crs libQuirks.a VFNStreamFormat.o VFNDebug.o ci_string.o
make[2]: Leaving directory '/build/genxrdpattern/src/objcryst/ObjCryst/Quirks'
make -f gnu.mak -C /build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/RefinableObj/ lib
make[2]: Entering directory '/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include -DREAL=float -O2 -static -c Tracker.cpp -o Tracker.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include -DREAL=float -O2 -static -c Simplex.cpp -o Simplex.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include -DREAL=float -O2 -static -c RefinableObj.cpp -o RefinableObj.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include -DREAL=float -O2 -static -c GlobalOptimObj.cpp -o GlobalOptimObj.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/time_clock.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/../ObjCryst/Quirks/Chronometer.h:25,
from GlobalOptimObj.cpp:29:
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/config/no_tr1/memory.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:27:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/time_duration.hpp:13,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/posix_time/posix_time_config.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/posix_time/ptime.hpp:12,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/date_time/posix_time/posix_time_types.hpp:12:
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/iomanip:42,
from GlobalOptimObj.cpp:23:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/format/internals.hpp:20,
from /build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/format.hpp:38,
from GlobalOptimObj.cpp:44:
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
GlobalOptimObj.cpp: In member function 'virtual void ObjCryst::MonteCarloObj::MultiRunOptimize(long int&, long int&, bool, float, float)':
GlobalOptimObj.cpp:659:29: warning: '%f' directive writing between 3 and 317 bytes into a region of size between 0 and 18 [-Wformat-overflow=]
GlobalOptimObj.cpp:659:29: note: assuming directive output of 8 bytes
In file included from /usr/include/stdio.h:980,
from /usr/include/c++/14.1.1/cstdio:42,
from /usr/include/c++/14.1.1/ext/string_conversions.h:45,
from /usr/include/c++/14.1.1/bits/basic_string.h:4154,
from /usr/include/c++/14.1.1/string:54:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'virtual void ObjCryst::MonteCarloObj::MultiRunOptimize(long int&, long int&, bool, float, float)' at GlobalOptimObj.cpp:659:17:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 16 and 348 bytes into a destination of size 30
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include -DREAL=float -O2 -static -c IO.cpp -o IO.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/../../static-libs/include -DREAL=float -O2 -static -c LSQNumObj.cpp -o LSQNumObj.o
ar crs libRefinableObj.a Tracker.o Simplex.o RefinableObj.o GlobalOptimObj.o IO.o LSQNumObj.o
make[2]: Leaving directory '/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj'
make -f gnu.mak -C /build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/ObjCryst lib
make[2]: Entering directory '/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Indexing.cpp -o Indexing.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/time_clock.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/../ObjCryst/Quirks/Chronometer.h:25,
from Indexing.cpp:28:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/config/no_tr1/memory.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:27:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/time_duration.hpp:13,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/posix_time/posix_time_config.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/posix_time/ptime.hpp:12,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/date_time/posix_time/posix_time_types.hpp:12:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_algobase.h:65,
from /usr/include/c++/14.1.1/algorithm:60,
from Indexing.cpp:22:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c CIF.cpp -o CIF.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:20,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format.hpp:38,
from CIF.cpp:3:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/refwrap.h:39,
from /usr/include/c++/14.1.1/vector:68,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format.hpp:17:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/alt_sstream.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:23:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/config/no_tr1/memory.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:27:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/ref_helpers.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/vec3.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/basic.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_vec.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rot_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rt_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_group.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/space_group.h:4,
from CIF.cpp:5:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_algobase.h:65,
from /usr/include/c++/14.1.1/bits/specfun.h:43,
from /usr/include/c++/14.1.1/cmath:3898,
from CIF.cpp:2:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/converter.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/cast.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/uctbx.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:6:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c ReflectionProfile.cpp -o ReflectionProfile.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c PowderPatternBackgroundBayesianMinimiser.cpp -o PowderPatternBackgroundBayesianMinimiser.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Polyhedron.cpp -o Polyhedron.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c ScatteringCorr.cpp -o ScatteringCorr.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c ZScatterer.cpp -o ZScatterer.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c SpaceGroup.cpp -o SpaceGroup.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/ref_helpers.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/vec3.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/basic.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_vec.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rot_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rt_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_group.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/space_group.h:4,
from SpaceGroup.cpp:28:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/iomanip:42,
from SpaceGroup.cpp:24:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref_reductions.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:5:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/converter.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/cast.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/uctbx.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:6:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/alt_sstream.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:23,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format.hpp:38,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/policies/error_handling.hpp:30,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/special_functions/gamma.hpp:31,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/special_functions/bessel.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/math/bessel.h:9,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/hendrickson_lattman.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/miller/sym_equiv.h:4,
from SpaceGroup.cpp:30:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/misc.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Scatterer.cpp -o Scatterer.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Atom.cpp -o Atom.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Molecule.cpp -o Molecule.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c ScatteringPower.cpp -o ScatteringPower.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/ref_helpers.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/shared_plain.h:31,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/shared.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/eltbx/xray_scattering/form_factor.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/eltbx/xray_scattering/gaussian.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/eltbx/xray_scattering.h:5,
from ScatteringPower.cpp:27:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_algobase.h:65,
from /usr/include/c++/14.1.1/bits/specfun.h:43,
from /usr/include/c++/14.1.1/cmath:3898,
from ScatteringPower.cpp:19:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref_reductions.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:5:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/iomanip:42,
from ScatteringPower.cpp:21:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c ScatteringPowerSphere.cpp -o ScatteringPowerSphere.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Crystal.cpp -o Crystal.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:20,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format.hpp:38,
from Crystal.cpp:28:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_tree.h:65,
from /usr/include/c++/14.1.1/set:62,
from Crystal.cpp:25:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/alt_sstream.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:23:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/config/no_tr1/memory.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:27:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/ref_helpers.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/vec3.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/basic.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_vec.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rot_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rt_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_group.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/space_group.h:4,
from Crystal.cpp:30:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_algobase.h:65,
from /usr/include/c++/14.1.1/bits/specfun.h:43,
from /usr/include/c++/14.1.1/cmath:3898,
from Crystal.cpp:24:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/converter.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/cast.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/uctbx.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:6:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c ScatteringData.cpp -o ScatteringData.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/ref_helpers.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/vec3.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/basic.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_vec.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rot_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rt_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_group.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/space_group.h:4,
from ScatteringData.cpp:28:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_algobase.h:65,
from /usr/include/c++/14.1.1/bits/specfun.h:43,
from /usr/include/c++/14.1.1/cmath:3898,
from ScatteringData.cpp:24:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref_reductions.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:5:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/error_utils.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/error.h:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/converter.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/cast.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/uctbx.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:6:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/alt_sstream.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:23,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format.hpp:38,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/policies/error_handling.hpp:30,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/special_functions/gamma.hpp:31,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/math/special_functions/bessel.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/math/bessel.h:9,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/hendrickson_lattman.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/miller/sym_equiv.h:4,
from ScatteringData.cpp:30:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/misc.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:5:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c DiffractionDataSingleCrystal.cpp -o DiffractionDataSingleCrystal.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c PowderPattern.cpp -o PowderPattern.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/detail/ref_helpers.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny_plain.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/vec3.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:6,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/basic.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_vec.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rot_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/rt_mx.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/tr_group.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/space_group.h:4,
from PowderPattern.cpp:29:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/error_utils.h:4,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/error.h:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/mat3.h:5:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/ref_reductions.h:8,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/scitbx/array_family/tiny.h:5:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/converter.hpp:16,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/cast.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/uctbx.h:5,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/cctbx/sgtbx/change_of_basis_op.h:6:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:453:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:474:43: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/numeric/conversion/detail/converter.hpp:504:47: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
PowderPattern.cpp: In member function 'void ObjCryst::PowderPatternBackground::InitRefParList()':
PowderPattern.cpp:634:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
In file included from /usr/include/stdio.h:980,
from PowderPattern.cpp:27:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void ObjCryst::PowderPatternBackground::InitRefParList()' at PowderPattern.cpp:634:14:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c Exception.cpp -o Exception.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor.cpp -o geomStructFactor.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor_001.cpp -o geomStructFactor_001.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor_002.cpp -o geomStructFactor_002.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor_067.cpp -o geomStructFactor_067.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor_097.cpp -o geomStructFactor_097.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor_230.cpp -o geomStructFactor_230.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c geomStructFactor_centro.cpp -o geomStructFactor_centro.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c IO.cpp -o IO.o
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:20,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format.hpp:38,
from IO.cpp:47:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/../ObjCryst/ObjCryst/General.h:29,
from IO.cpp:26:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/alt_sstream.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/format/internals.hpp:23:
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/config/no_tr1/memory.hpp:21,
from /build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:27:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c UnitCell.cpp -o UnitCell.o
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/../../static-libs/include -DREAL=float -O2 -static -c test.cpp -o test.o
ar crs libcryst.a Indexing.o CIF.o ReflectionProfile.o PowderPatternBackgroundBayesianMinimiser.o Polyhedron.o ScatteringCorr.o ZScatterer.o SpaceGroup.o Scatterer.o Atom.o Molecule.o ScatteringPower.o ScatteringPowerSphere.o Crystal.o ScatteringData.o DiffractionDataSingleCrystal.o PowderPattern.o Exception.o geomStructFactor.o geomStructFactor_001.o geomStructFactor_002.o geomStructFactor_067.o geomStructFactor_097.o geomStructFactor_230.o geomStructFactor_centro.o IO.o UnitCell.o test.o
make[2]: Leaving directory '/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst'
g++ -march=armv8-a -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -I/include -I/build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/.. -I/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include -DREAL=float -O2 -static -c Fox.cpp -o Fox.o
In file included from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/optional/optional.hpp:36,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/optional.hpp:15,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/format/internals.hpp:20,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/format.hpp:38,
from Fox.cpp:58:
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/utility/compare_pointees.hpp:36:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/string:49,
from /usr/include/c++/14.1.1/bits/locale_classes.h:40,
from /usr/include/c++/14.1.1/bits/ios_base.h:41,
from /usr/include/c++/14.1.1/ios:44,
from /usr/include/c++/14.1.1/istream:40,
from /usr/include/c++/14.1.1/sstream:40,
from Fox.cpp:55:
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/utility/compare_pointees.hpp:59:31: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:32,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/shared_ptr.hpp:17,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/format/alt_sstream.hpp:21,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/format/internals.hpp:23:
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/smart_ptr/detail/shared_count.hpp:284:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/memory:78,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/config/no_tr1/memory.hpp:21,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:27:
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:140:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:269:30: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/smart_ptr/shared_ptr.hpp:313:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
/usr/include/c++/14.1.1/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/operators.hpp:86,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/date_time/time_duration.hpp:13,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/date_time/posix_time/posix_time_config.hpp:16,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/date_time/posix_time/posix_time_system.hpp:13,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/date_time/posix_time/ptime.hpp:12,
from /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/date_time/posix_time/posix_time_types.hpp:12,
from /build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/../ObjCryst/Quirks/Chronometer.h:25,
from Fox.cpp:89:
/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/include/boost/iterator.hpp:42:32: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.1.1/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14.1.1/string:47:
/usr/include/c++/14.1.1/bits/stl_iterator_base_types.h:127:31: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++ -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/local/lib -L/build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/CrystVector -L/build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/ObjCryst -L/build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/RefinableObj -L/build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/lib -L/build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/Quirks -L/build/genxrdpattern/src/objcryst/Fox/src/../../ObjCryst/wxCryst -L/x86_64/lib -static -o Fox-nogui Fox.o -lm -lcryst -lCrystVector -lQuirks -lRefinableObj -lcctbx /build/genxrdpattern/src/objcryst/Fox/src/../../static-libs/lib/libnewmat.a
make[1]: Leaving directory '/build/genxrdpattern/src/objcryst/Fox/src'
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 14.1.1
-- The CXX compiler identification is GNU 14.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib/distcc/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib/distcc/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at CMakeLists.txt:8 (find_package):
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables.
Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
CMake variable ObjCryst_ROOT is set to:
/build/genxrdpattern/src/objcryst
For compatibility, CMake is ignoring the variable.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found ObjCryst include dir: /build/genxrdpattern/src/objcryst
-- Found ObjCryst libraries: /build/genxrdpattern/src/objcryst/static-libs/lib/libnewmat.a;/build/genxrdpattern/src/objcryst/static-libs/lib/libcctbx.a;/build/genxrdpattern/src/objcryst/ObjCryst/CrystVector/libCrystVector.a;/build/genxrdpattern/src/objcryst/ObjCryst/Quirks/libQuirks.a;/build/genxrdpattern/src/objcryst/ObjCryst/RefinableObj/libRefinableObj.a;/build/genxrdpattern/src/objcryst/ObjCryst/ObjCryst/libcryst.a
-- Configuring done (1.4s)
-- Generating done (0.0s)
-- Build files have been written to: /build/genxrdpattern/src/build
[ 50%] Building CXX object CMakeFiles/genXrdPattern.dir/genXrdPattern.cpp.o
[100%] Linking CXX executable genXrdPattern
[100%] Built target genXrdPattern
==> Entering fakeroot environment...
==> Starting package()...
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> WARNING: Package contains reference to $srcdir
usr/bin/genXrdPattern
==> Creating package "genxrdpattern"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: genxrdpattern 1.1-4 (Tue 02 Jul 2024 06:54:31 PM MDT)
==> Cleaning up...