==> Synchronizing chroot copy [/home/leming/armv8/root] -> [leming]...done
==> Making package: openbabel 3.1.1-10 (Thu May 1 07:29:11 2025)
==> Retrieving sources...
-> Found openbabel-3.1.1-source.tar.bz2
-> Found c0570bfe.patch
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
openbabel-3.1.1-source.tar.bz2 ... Passed
c0570bfe.patch ... Passed
==> Making package: openbabel 3.1.1-10 (Thu 01 May 2025 07:29:19 AM MDT)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
warning: dependency cycle detected:
warning: harfbuzz will be installed before its freetype2 dependency
warning: dependency cycle detected:
warning: mesa will be installed before its libglvnd dependency
Packages (125) adwaita-cursors-48.0-1 adwaita-fonts-48.2-1
adwaita-icon-theme-48.0-1 adwaita-icon-theme-legacy-46.2-3
at-spi2-core-2.56.2-1 avahi-1:0.8+r194+g3f79789-3
boost-libs-1.87.0-3 cairo-1.18.4-1 cantarell-fonts-1:0.303.1-2
cppdap-1.58.0-2 dav1d-1.5.1-1 dconf-0.40.0-3
default-cursors-3-1 desktop-file-utils-0.28-1 duktape-2.7.0-7
fontconfig-2:2.16.2-1 freetype2-2.13.3-3 fribidi-1.0.16-1
gdk-pixbuf2-2.42.12-2 glib-networking-1:2.80.1-1
graphene-1.10.8-2 graphite-1:1.3.14-4
gsettings-desktop-schemas-48.0-1
gsettings-system-schemas-48.0-1 gssdp-1.6.3-2
gst-plugins-bad-libs-1.26.0-4 gst-plugins-base-libs-1.26.0-4
gstreamer-1.26.0-4 gtk-update-icon-cache-1:4.18.4-1
gtk3-1:3.24.49-1 gupnp-1:1.6.8-1 gupnp-igd-1.6.0-1
harfbuzz-11.2.0-1 hicolor-icon-theme-0.18-1 hidapi-0.14.0-3
iso-codes-4.18.0-1 jbigkit-2.1-8 json-glib-1.10.6-1
jsoncpp-1.9.6-3 lcms2-2.17-1 libcloudproviders-0.3.6-1
libcolord-1.4.7-2 libcups-2:2.4.12-1 libdaemon-0.14-6
libdatrie-0.2.13-4 libdrm-2.4.124-1 libedit-20250104_3.1-1
libepoxy-1.5.10-3 libglvnd-1.7.0-1 libgudev-238-1
libice-1.1.2-1 libjpeg-turbo-3.1.0-1 libmspack-1:1.11-1
libnice-0.1.22-1 libnotify-0.8.6-1 libpciaccess-0.18.1-2
libpng-1.6.47-1 libproxy-0.5.9-1 librsvg-2:2.60.0-2
libsm-1.2.6-1 libsoup3-3.6.5-1 libstemmer-2.2.0-2
libthai-0.1.29-3 libtiff-4.7.0-1 libunwind-1.8.1-3
libuv-1.51.0-1 libva-2.22.0-1 libx11-1.8.12-1 libxau-1.0.12-1
libxcb-1.17.0-1 libxcomposite-0.4.6-2 libxcursor-1.2.3-1
libxdamage-1.1.6-2 libxdmcp-1.1.5-1.1 libxext-1.3.6-1
libxfixes-6.0.1-2 libxft-2.3.9-1 libxi-1.8.2-1
libxinerama-1.1.5-2 libxkbcommon-1.8.1-1
libxkbcommon-x11-1.8.1-1 libxrandr-1.5.4-1 libxrender-0.9.12-1
libxshmfence-1.3.3-1 libxtst-1.2.5-1 libxv-1.0.13-1
libxxf86vm-1.1.6-1 llvm-libs-19.1.7-2
lm_sensors-1:3.6.0.r41.g31d1f125-3 lzo-2.10-5 mesa-1:25.0.4-1
orc-0.4.41-1 pango-1:1.56.3-1 pixman-0.44.2-1
python-autocommand-2.2.2-7 python-jaraco.collections-5.1.0-1
python-jaraco.context-6.0.1-1 python-jaraco.functools-4.1.0-1
python-jaraco.text-4.0.0-2 python-more-itertools-10.6.0-1
python-packaging-25.0-1 python-platformdirs-4.3.6-2
python-wheel-0.45.1-1 rhash-1.4.4-1 sdl2-compat-2.32.54-2
sdl3-3.2.10-1 shared-mime-info-2.4-2 spirv-tools-1:1.4.309.0-1
tinysparql-3.9.2-2 vulkan-icd-loader-1.4.309.0-1
wayland-1.23.1-1 wxwidgets-common-3.2.8-1 xcb-proto-1.17.0-3
xkeyboard-config-2.44-1 xorg-xprop-1.2.8-1 xorgproto-2024.1-2
boost-1.87.0-3 cmake-4.0.1-1 coordgen-3.0.2-2 eigen-3.4.0-2
maeparser-1.3.2-1 python-setuptools-1:79.0.1-1
rapidjson-1.1.0-6 swig-4.3.0-1 wxwidgets-gtk3-3.2.8-1
Total Download Size: 8.47 MiB
Total Installed Size: 842.97 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
wxwidgets-gtk3-3.2.8-1-aarch64 downloading...
wxwidgets-common-3.2.8-1-aarch64 downloading...
eigen-3.4.0-2-any downloading...
coordgen-3.0.2-2-aarch64 downloading...
rapidjson-1.1.0-6-any downloading...
maeparser-1.3.2-1-aarch64 downloading...
libmspack-1:1.11-1-aarch64 downloading...
libnotify-0.8.6-1-aarch64 downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing boost-libs...
Optional dependencies for boost-libs
openmpi: for mpi support
installing boost...
Optional dependencies for boost
python: for python bindings [installed]
installing cppdap...
installing hicolor-icon-theme...
installing jsoncpp...
Optional dependencies for jsoncpp
jsoncpp-doc: documentation
installing libuv...
installing rhash...
installing cmake...
Optional dependencies for cmake
make: for unix Makefile generator [installed]
ninja: for ninja generator
qt6-base: cmake-gui
installing maeparser...
installing coordgen...
installing eigen...
installing python-more-itertools...
installing python-jaraco.functools...
installing python-jaraco.context...
installing python-autocommand...
installing python-jaraco.text...
Optional dependencies for python-jaraco.text
python-inflect: for show-newlines script
installing python-jaraco.collections...
installing python-packaging...
installing python-platformdirs...
installing python-wheel...
Optional dependencies for python-wheel
python-keyring: for wheel.signatures
python-xdg: for wheel.signatures
python-setuptools: for legacy bdist_wheel subcommand [pending]
installing python-setuptools...
installing rapidjson...
installing swig...
installing libpng...
installing graphite...
Optional dependencies for graphite
graphite-docs: Documentation
installing harfbuzz...
Optional dependencies for harfbuzz
harfbuzz-utils: utilities
installing freetype2...
installing fontconfig...
Creating fontconfig configuration...
Rebuilding fontconfig cache...
installing xcb-proto...
installing xorgproto...
installing libxdmcp...
installing libxau...
installing libxcb...
installing libx11...
installing libxext...
installing libxrender...
installing lzo...
installing pixman...
installing cairo...
installing libjpeg-turbo...
installing jbigkit...
installing libtiff...
Optional dependencies for libtiff
freeglut: for using tiffgt
installing shared-mime-info...
installing gdk-pixbuf2...
Optional dependencies for gdk-pixbuf2
libwmf: Load .wmf and .apm
libopenraw: Load .dng, .cr2, .crw, .nef, .orf, .pef, .arw, .erf, .mrw, and
.raf
libavif: Load .avif
libheif: Load .heif, .heic, and .avif
libjxl: Load .jxl
librsvg: Load .svg, .svgz, and .svg.gz [pending]
webp-pixbuf-loader: Load .webp
installing libunwind...
installing gstreamer...
Optional dependencies for gstreamer
python: gst-plugins-doc-cache-generator [installed]
installing graphene...
installing iso-codes...
installing libpciaccess...
installing libdrm...
Optional dependencies for libdrm
cairo: needed for modetest tool [installed]
installing libxshmfence...
installing libxxf86vm...
installing libedit...
installing llvm-libs...
installing lm_sensors...
Optional dependencies for lm_sensors
rrdtool: for logging with sensord
perl: for sensor detection and configuration convert [installed]
installing spirv-tools...
installing default-cursors...
Optional dependencies for default-cursors
adwaita-cursors: default cursor theme [pending]
installing wayland...
installing mesa...
Optional dependencies for mesa
opengl-man-pages: for the OpenGL API man pages
installing libglvnd...
installing libgudev...
installing libxfixes...
installing libxi...
installing libxv...
installing orc...
installing gst-plugins-base-libs...
installing dconf...
installing gsettings-system-schemas...
installing duktape...
installing libproxy...
installing glib-networking...
installing libsoup3...
Optional dependencies for libsoup3
samba: Windows Domain SSO
installing gssdp...
Optional dependencies for gssdp
gtk4: gssdp-device-sniffer
installing gupnp...
Optional dependencies for gupnp
python: gupnp-binding-tool [installed]
installing gupnp-igd...
installing libnice...
Optional dependencies for libnice
gstreamer: "nice" GStreamer plugin [installed]
installing libva...
Optional dependencies for libva
intel-media-driver: backend for Intel GPUs (>= Broadwell)
libva-intel-driver: backend for Intel GPUs (<= Haswell)
libva-mesa-driver: backend for AMD and NVIDIA GPUs [installed]
installing xkeyboard-config...
installing libxkbcommon...
Optional dependencies for libxkbcommon
libxkbcommon-x11: xkbcli interactive-x11 [pending]
wayland: xkbcli interactive-wayland [installed]
installing libxkbcommon-x11...
installing vulkan-icd-loader...
Optional dependencies for vulkan-icd-loader
vulkan-driver: packaged vulkan driver
installing gst-plugins-bad-libs...
installing adwaita-icon-theme-legacy...
installing adwaita-cursors...
installing adwaita-icon-theme...
installing adwaita-fonts...
installing gsettings-desktop-schemas...
installing libxtst...
installing xorg-xprop...
installing at-spi2-core...
installing cantarell-fonts...
installing desktop-file-utils...
installing fribidi...
installing libcloudproviders...
installing lcms2...
installing libcolord...
installing libdaemon...
installing avahi...
Optional dependencies for avahi
gtk3: avahi-discover, avahi-discover-standalone, bshell, bssh, bvnc
[pending]
libevent: libevent bindings [installed]
nss-mdns: NSS support for mDNS
python-dbus: avahi-bookmarks, avahi-discover
python-gobject: avahi-bookmarks, avahi-discover
python-twisted: avahi-bookmarks
qt5-base: qt5 bindings
installing libcups...
installing libepoxy...
installing dav1d...
Optional dependencies for dav1d
dav1d-doc: HTML documentation
installing libdatrie...
installing libthai...
installing libxft...
installing pango...
installing librsvg...
installing libxcomposite...
installing libxcursor...
installing libxdamage...
installing libxinerama...
installing libxrandr...
installing json-glib...
installing libstemmer...
installing tinysparql...
installing gtk-update-icon-cache...
installing gtk3...
Optional dependencies for gtk3
evince: Default print preview command
installing libnotify...
installing libmspack...
installing libice...
installing libsm...
installing hidapi...
Optional dependencies for hidapi
libusb: for hidapi-libusb [installed]
installing sdl3...
Optional dependencies for sdl3
alsa-lib: ALSA audio driver
libpulse: PulseAudio audio driver
jack: JACK audio driver
pipewire: PipeWire audio driver
vulkan-driver: vulkan renderer
sndio: sndio audio driver
libdecor: Wayland client decorations
installing sdl2-compat...
installing wxwidgets-common...
installing wxwidgets-gtk3...
Optional dependencies for wxwidgets-gtk3
webkit2gtk-4.1: for webview support
:: Running post-transaction hooks...
( 1/14) Creating system user accounts...
Creating group 'avahi' with GID 971.
Creating user 'avahi' (Avahi mDNS/DNS-SD daemon) with UID 971 and GID 971.
( 2/14) Reloading system manager configuration...
Skipped: Current root is not booted.
( 3/14) Reloading user manager configuration...
Skipped: Current root is not booted.
( 4/14) Arming ConditionNeedsUpdate...
( 5/14) Updating the MIME type database...
( 6/14) Updating fontconfig configuration...
( 7/14) Reloading system bus configuration...
Skipped: Current root is not booted.
( 8/14) Updating fontconfig cache...
( 9/14) Probing GDK-Pixbuf loader modules...
(10/14) Updating GIO module cache...
(11/14) Compiling GSettings XML schema files...
(12/14) Probing GTK3 input method modules...
(13/14) Updating icon theme caches...
(14/14) Updating the desktop file MIME type cache...
[?25h==> Retrieving sources...
-> Found openbabel-3.1.1-source.tar.bz2
-> Found c0570bfe.patch
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Extracting openbabel-3.1.1-source.tar.bz2 with bsdtar
==> Starting prepare()...
patching file src/config.h.cmake
==> Starting build()...
CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The C compiler identification is GNU 14.2.1
-- The CXX compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib/distcc/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib/distcc/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Using included inchi library.
-- Found LibXml2: /usr/lib/libxml2.so (found version "2.14.2")
-- Found ZLIB: /usr/lib/libz.so (found version "1.3.1")
-- Found wxWidgets: -lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.8")
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - not found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
CMake Warning (dev) at CMakeLists.txt:298 (exec_program):
Policy CMP0153 is not set: The exec_program command should not be called.
Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Use execute_process() instead.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Checking available shared pointer...
-- Performing Test HAVE_STD_SHARED_PTR
-- Performing Test HAVE_STD_SHARED_PTR - Success
-- Performing Test HAVE_STD_TR1_SHARED_PTR
-- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success
-- Use std::shared_ptr in memory
CMake Warning (dev) at CMakeLists.txt:357 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found version "1.87.0") found components: program_options iostreams
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
CMake Warning (dev) at CMakeLists.txt:472 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found version "1.87.0") found components: filesystem iostreams unit_test_framework
-- maeparser include dir set as '/usr/include'
-- maeparser libraries set as '/usr/lib/libmaeparser.so'
-- Maestro formats will be supported. Using MaeParser libraries at /usr/lib/libmaeparser.so.
-- coordgen include dir set as /usr/include
-- coordgen libraries set as '/usr/lib/libcoordgen.so'
-- coordgen templates file set as '/usr/share/coordgen/templates.mae'
-- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/lib/libcoordgen.so.
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.4.3")
-- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0")
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include
-- Checking for module 'cairo'
-- Found cairo, version 1.18.4
-- Found Cairo: /usr/lib/libcairo.so
-- Cairo found. PNG output will be supported.
CMake Warning (dev) at src/CMakeLists.txt:6 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found suitable version "1.87.0", minimum required is "1.45.0") found components: system
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.87.0/BoostConfig.cmake (found version "1.87.0") found components: program_options iostreams
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
-- wxWidgets found => GUI will be built
CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
test/CMakeLists.txt:226 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/bin/python (found version "3.13.3")
CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
test/CMakeLists.txt:250 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- Found SWIG: /usr/bin/swig (found version "4.3.0")
-- Found SWIG: /usr/bin/swig (found suitable version "4.3.0", minimum required is "2.0")
CMake Warning (dev) at scripts/CMakeLists.txt:41 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at scripts/CMakeLists.txt:50 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonLibs: /usr/lib/libpython3.13.so (found version "3.13.3")
-- Python bindings will be compiled
-- Configuring done (27.3s)
-- Generating done (1.2s)
-- Build files have been written to: /build/openbabel/src/build
[ 0%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o
[ 1%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o
[ 1%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o
[ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o
[ 1%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o
[ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o
[ 2%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o
[ 2%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o
[ 2%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o
[ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/alias.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/alias.cpp:16:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/chargemodel.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/descriptor.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/descriptor.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/src/format.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprint.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprint.cpp:21:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.c.o
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/builder.cpp:31:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/builder.h:23,
from /build/openbabel/src/openbabel-3.1.1/src/builder.cpp:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/forcefield.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_tree.h:65,
from /usr/include/c++/14.2.1/set:62,
from /build/openbabel/src/openbabel-3.1.1/src/forcefield.cpp:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/op.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/obconversion.cpp:48:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/obconversion.cpp:37:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/src/plugin.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/query.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/bond.h:31,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/query.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/query.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o
[ 12%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o
[ 13%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/tautomer.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/tautomer.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/tautomer.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/transform.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/transform.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/mcdlutil.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/mcdlutil.cpp:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/obmolecformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o
[ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o
[ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o
[ 16%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/confsearch.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/atom.h:30,
from /build/openbabel/src/openbabel-3.1.1/src/confsearch.cpp:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)':
/build/openbabel/src/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_function.h:1435:
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)':
/build/openbabel/src/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/conformersearch.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/conformersearch.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/conformersearch.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o
[ 18%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o
[ 19%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o
[ 19%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o
[ 19%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 19%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o
[ 19%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o
[ 19%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o
[ 20%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o
[ 20%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o
[ 20%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o
[ 20%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o
[ 20%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o
[ 21%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.c.o
[ 21%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.c.o
[ 21%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.c.o
[ 21%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.c.o
[ 21%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o
[ 22%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o
/build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)':
/build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template<class _Operation> class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_function.h:1435,
from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp:26:
/usr/include/c++/14.2.1/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<long unsigned int>; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:136:5: note: declared here
136 | bind1st(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)':
/build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template<class _Operation> class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<long unsigned int>; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:136:5: note: declared here
136 | bind1st(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
[ 22%] Linking C shared library ../../../lib/libinchi.so
[ 22%] Built target inchi
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/distgeom.cpp:38:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/distgeom.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/distgeom.cpp:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 22%] Linking CXX shared library ../lib/libopenbabel.so
[ 22%] Built target openbabel
[ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o
[ 25%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o
[ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o
[ 25%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o
[ 25%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o
[ 26%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o
[ 27%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addfilename.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addfilename.cpp:18:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprints/finger2.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprints/finger2.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/eem.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/charges/eem.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addinindex.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addinindex.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o
[ 27%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mol2format.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Linking CXX shared module ../../lib/mol2format.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/gasteiger.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o
[ 27%] Built target mol2format
[ 27%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addpolarh.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addpolarh.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprints/finger3.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprints/finger3.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/none.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/groupcontrib.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:33:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addnonpolarh.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/addnonpolarh.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/fingerprint.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:15:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 27%] Linking CXX shared module ../lib/plugin_fingerprints.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/canonical.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldgaff.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 28%] Built target plugin_fingerprints
[ 28%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o
[ 28%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/filters.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/mmff94.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/changecell.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/changecell.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp:35:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()':
/build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp:1709:22: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=]
/build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp:1709:22: note: directive argument in the range [-2147483648, 2147483547]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/iomanip:42,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp:27:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'std::string OpenBabel::MDLFormat::GetTimeDate()' at /build/openbabel/src/openbabel-3.1.1/src/formats/mdlformat.cpp:1709:13:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 29%] Linking CXX shared module ../../lib/mdlformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/delpolarh.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/delpolarh.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o
[ 29%] Built target mdlformat
[ 29%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)':
/build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp:2865:32: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)' at /build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp:2865:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)':
/build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp:2857:32: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)' at /build/openbabel/src/openbabel-3.1.1/src/formats/smilesformat.cpp:2857:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/delnonpolarh.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/delnonpolarh.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Linking CXX shared module ../../lib/smilesformat.so
[ 29%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/gen2D.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/gen2D.cpp:21:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/fromfile.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Built target smilesformat
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/oberror.h:26,
from /build/openbabel/src/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 30%] Linking CXX shared module ../lib/plugin_descriptors.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/asciiformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:684:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:684:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:702:64: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:702:29:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:739:34: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=]
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pdbformat.cpp:739:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o
[ 30%] Linking CXX shared module ../../lib/pdbformat.so
[ 30%] Built target plugin_descriptors
[ 30%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/fillUC.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o
[ 30%] Built target pdbformat
[ 30%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/copyformat.cpp:14:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 30%] Linking CXX shared module ../../lib/copyformat.so
[ 31%] Linking CXX shared module ../../lib/asciiformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/inchiformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/formats/inchiformat.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/src/formats/inchiformat.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldghemical.h:23,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 31%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o
[ 31%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o
[ 31%] Built target copyformat
[ 31%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o
[ 31%] Built target asciiformat
[ 31%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o
[ 31%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/forcefield.cpp:31:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/forcefield.cpp:29:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/MNAformat.cpp:31:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../../lib/MNAformat.so
[ 32%] Built target MNAformat
[ 32%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/molreport.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../../lib/molreport.so
[ 32%] Built target molreport
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/unique.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/src/ops/unique.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../../lib/inchiformat.so
[ 32%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/nulformat.cpp:14:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../../lib/nulformat.so
[ 32%] Built target inchiformat
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o
[ 32%] Built target nulformat
[ 32%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/painterformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/gen3d.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 32%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o
[ 33%] Linking CXX shared module ../../lib/painterformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/largest.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o
[ 33%] Built target painterformat
[ 34%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/src/ops/loader.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/ops/loader.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/povrayformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/povrayformat.cpp: In function 'void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)':
/build/openbabel/src/openbabel-3.1.1/src/formats/povrayformat.cpp:526:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<char>; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_function.h:1435:
/usr/include/c++/14.2.1/backward/binders.h:136:5: note: declared here
136 | bind1st(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/povrayformat.cpp:587:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to<char>; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:136:5: note: declared here
136 | bind1st(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
[ 34%] Linking CXX shared module ../../lib/povrayformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefielduff.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o
[ 35%] Built target povrayformat
[ 35%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/neutralize.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/eqeq.h:22,
from /build/openbabel/src/openbabel-3.1.1/src/charges/eqeq.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/reportformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opsplit.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Linking CXX shared module ../../lib/reportformat.so
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o
[ 35%] Built target reportformat
[ 35%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/partialcharges.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:31:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Linking CXX shared module ../lib/plugin_forcefields.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/optransform.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/ops/optransform.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/parsmart.h:23,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/phmodel.h:23,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/optransform.h:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o
[ 35%] Built target plugin_forcefields
[ 35%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/readconformers.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/svgformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o
[ 36%] Linking CXX shared module ../../lib/svgformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/textformat.cpp:14:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 36%] Linking CXX shared module ../../lib/textformat.so
[ 36%] Built target svgformat
[ 36%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o
[ 36%] Built target textformat
[ 36%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/titleformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 36%] Linking CXX shared module ../../lib/titleformat.so
[ 36%] Built target titleformat
[ 36%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/ops/ophighlight.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/parsmart.h:23,
from /build/openbabel/src/openbabel-3.1.1/src/ops/ophighlight.cpp:16:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opisomorph.h:15,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opisomorph.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/parsmart.h:23,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opisomorph.cpp:15:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/sort.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/ops/sort.cpp:32:28: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pngformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pngformat.cpp:13:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 37%] Linking CXX shared module ../../lib/pngformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/xout.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o
[ 37%] Built target pngformat
[ 38%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/acesformat.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/confabreport.cpp:34:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 38%] Linking CXX shared module ../../lib/acesformat.so
[ 38%] Linking CXX shared module ../../lib/confabreport.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/conformer.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/conformer.cpp:29:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/qeq.h:22,
from /build/openbabel/src/openbabel-3.1.1/src/charges/qeq.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 39%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o
[ 39%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o
[ 39%] Built target acesformat
[ 39%] Built target confabreport
[ 39%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o
[ 39%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opconfab.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opconfab.cpp:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 39%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/abinitformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 39%] Linking CXX shared module ../../lib/abinitformat.so
[ 39%] Built target abinitformat
[ 39%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/op.h:25,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opalign.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/ops/opalign.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 39%] Linking CXX shared module ../lib/plugin_ops.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/aoforceformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 39%] Linking CXX shared module ../../lib/aoforceformat.so
[ 39%] Built target plugin_ops
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/castepformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 40%] Linking CXX shared module ../../lib/castepformat.so
[ 40%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/daltonformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 40%] Linking CXX shared module ../../lib/daltonformat.so
[ 40%] Built target aoforceformat
[ 40%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o
[ 40%] Built target castepformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/crystal09format.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/formats/crystal09format.cpp:15:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 41%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o
[ 41%] Linking CXX shared module ../../lib/crystal09format.so
[ 41%] Built target daltonformat
[ 41%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/dmolformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 42%] Linking CXX shared module ../../lib/dmolformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/adfformat.cpp:35:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/formats/adfformat.cpp:29:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 42%] Linking CXX shared module ../../lib/adfformat.so
[ 42%] Built target crystal09format
[ 42%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o
[ 42%] Built target dmolformat
[ 42%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fhiaimsformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 42%] Linking CXX shared module ../../lib/fhiaimsformat.so
[ 42%] Built target fhiaimsformat
[ 43%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o
[ 43%] Built target adfformat
[ 43%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/functional:49,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp:16:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp:668:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_function.h:1435:
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp:671:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp:674:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/fchkformat.cpp:677:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater<int>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
[ 43%] Linking CXX shared module ../../lib/fchkformat.so
[ 43%] Built target fchkformat
[ 44%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gausszmatformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 44%] Linking CXX shared module ../../lib/gausszmatformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gausscubeformat.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gausscubeformat.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../lib/gausscubeformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/hinformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../lib/hinformat.so
[ 45%] Built target gausszmatformat
[ 45%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o
[ 45%] Built target gausscubeformat
[ 45%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o
[ 45%] Built target hinformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gulpformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../lib/gulpformat.so
[ 45%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o
[ 45%] Built target gulpformat
[ 45%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gamessformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../lib/gamessformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/jaguarformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../lib/jaguarformat.so
[ 45%] Built target gamessformat
[ 45%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o
[ 45%] Built target jaguarformat
[ 45%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gaussformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/data.h:27,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gaussformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../../lib/gaussformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/chargemodel.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/charges/qtpie.h:22,
from /build/openbabel/src/openbabel-3.1.1/src/charges/qtpie.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/dlhandler.h:24,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Linking CXX shared module ../lib/plugin_charges.so
[ 45%] Built target gaussformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/molproformat.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 45%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o
[ 46%] Linking CXX shared module ../../lib/molproformat.so
[ 46%] Built target plugin_charges
[ 46%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pwscfformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/pwscfformat.so
[ 46%] Built target molproformat
[ 46%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o
[ 46%] Built target pwscfformat
[ 46%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/turbomoleformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/qchemformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/src/formats/qchemformat.cpp:16:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/turbomoleformat.so
[ 46%] Linking CXX shared module ../../lib/qchemformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mopacformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/mopacformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/nwchemformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 47%] Linking CXX shared module ../../lib/nwchemformat.so
[ 47%] Built target turbomoleformat
[ 47%] Built target qchemformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/zindoformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xsfformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/zindoformat.so
[ 48%] Linking CXX shared module ../../lib/xsfformat.so
[ 48%] Building CXX object src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o
[ 48%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o
[ 48%] Built target mopacformat
[ 48%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o
[ 48%] Built target nwchemformat
[ 48%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/siestaformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/siestaformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/APIInterface.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/APIInterface.so
[ 48%] Built target xsfformat
[ 48%] Built target zindoformat
[ 48%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o
[ 48%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o
[ 48%] Built target APIInterface
[ 48%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o
[ 48%] Built target siestaformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/vaspformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/vaspformat.cpp:535:35: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_function.h:1435:
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/vaspformat.cpp:589:36: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
[ 48%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o
[ 48%] Linking CXX shared module ../../lib/vaspformat.so
[ 48%] Built target vaspformat
[ 48%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/CSRformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/CSRformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/PQSformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/PQSformat.so
[ 48%] Built target CSRformat
[ 48%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/alchemyformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/alchemyformat.so
[ 48%] Built target PQSformat
[ 48%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gamessukformat.cpp:14:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/gamessukformat.so
[ 48%] Built target alchemyformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/orcaformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 49%] Linking CXX shared module ../../lib/orcaformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/acrformat.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/formats/acrformat.cpp:23:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 49%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o
[ 49%] Linking CXX shared module ../../lib/acrformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/maeformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 49%] Built target gamessukformat
[ 49%] Linking CXX shared module ../../lib/maeformat.so
[ 49%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o
[ 49%] Built target orcaformat
[ 49%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/amberformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 50%] Linking CXX shared module ../../lib/amberformat.so
[ 50%] Built target maeformat
[ 50%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/balstformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 50%] Linking CXX shared module ../../lib/balstformat.so
[ 50%] Built target amberformat
[ 50%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o
[ 50%] Built target balstformat
[ 50%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o
[ 50%] Built target acrformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/bgfformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/boxformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 50%] Linking CXX shared module ../../lib/bgfformat.so
[ 50%] Linking CXX shared module ../../lib/boxformat.so
[ 50%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/cacaoformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/cacheformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 51%] Linking CXX shared module ../../lib/cacaoformat.so
[ 51%] Linking CXX shared module ../../lib/cacheformat.so
[ 51%] Built target boxformat
[ 51%] Built target bgfformat
[ 52%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o
[ 52%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/MCDLformat.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 52%] Built target cacaoformat
[ 53%] Linking CXX shared module ../../lib/MCDLformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/carformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 53%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o
[ 53%] Linking CXX shared module ../../lib/carformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/cccformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 53%] Linking CXX shared module ../../lib/cccformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chem3dformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chem3dformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 53%] Linking CXX shared module ../../lib/chem3dformat.so
[ 53%] Built target MCDLformat
[ 54%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o
[ 54%] Built target cccformat
[ 55%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chemtoolformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 55%] Linking CXX shared module ../../lib/chemtoolformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chemdrawct.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 55%] Linking CXX shared module ../../lib/chemdrawct.so
[ 55%] Built target chem3dformat
[ 55%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o
[ 55%] Built target cacheformat
[ 55%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o
[ 55%] Built target chemdrawct
[ 55%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o
[ 55%] Built target carformat
[ 56%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/crkformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 56%] Linking CXX shared module ../../lib/crkformat.so
[ 56%] Built target chemtoolformat
[ 56%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/cssrformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 57%] Linking CXX shared module ../../lib/cssrformat.so
[ 57%] Built target crkformat
[ 57%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/cofformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 57%] Linking CXX shared module ../../lib/cofformat.so
[ 57%] Built target cssrformat
[ 57%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o
[ 57%] Built target cofformat
[ 57%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/exyzformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 57%] Linking CXX shared module ../../lib/exyzformat.so
[ 57%] Built target exyzformat
[ 57%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fhformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 57%] Linking CXX shared module ../../lib/fhformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/dlpolyformat.cpp:14:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 57%] Linking CXX shared module ../../lib/dlpolyformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/featformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 58%] Linking CXX shared module ../../lib/featformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fastsearchformat.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fastsearchformat.cpp:16:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 58%] Linking CXX shared module ../../lib/fastsearchformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fastaformat.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 58%] Built target fhformat
[ 58%] Linking CXX shared module ../../lib/fastaformat.so
[ 58%] Built target dlpolyformat
[ 58%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o
[ 58%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fingerprintformat.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fingerprintformat.cpp:15:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 59%] Linking CXX shared module ../../lib/fingerprintformat.so
[ 59%] Built target featformat
[ 59%] Built target fastsearchformat
[ 59%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o
[ 59%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o
[ 59%] Built target fastaformat
[ 59%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o
[ 59%] Built target fingerprintformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fpsformat.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/src/formats/fpsformat.cpp:15:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 59%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o
[ 59%] Linking CXX shared module ../../lib/fpsformat.so
[ 59%] Built target fpsformat
[ 59%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/cifformat.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 59%] Linking CXX shared module ../../lib/cifformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/freefracformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/gromos96format.cpp:54:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 59%] Linking CXX shared module ../../lib/freefracformat.so
[ 59%] Linking CXX shared module ../../lib/gromos96format.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/ghemicalformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 59%] Built target cifformat
[ 60%] Linking CXX shared module ../../lib/ghemicalformat.so
[ 60%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o
[ 60%] Built target freefracformat
[ 60%] Built target gromos96format
[ 60%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o
[ 60%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o
[ 60%] Built target ghemicalformat
[ 60%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/groformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 60%] Linking CXX shared module ../../lib/groformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp:534:10: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
......
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp:533:16:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp:516:10: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
......
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/lmpdatformat.cpp:515:16:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 60%] Linking CXX shared module ../../lib/lmpdatformat.so
[ 60%] Built target groformat
[ 60%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o
[ 60%] Built target lmpdatformat
[ 60%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mpdformat.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/lpmdformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 61%] Linking CXX shared module ../../lib/mpdformat.so
[ 62%] Linking CXX shared module ../../lib/lpmdformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mmodformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 62%] Linking CXX shared module ../../lib/mmodformat.so
[ 62%] Built target mpdformat
[ 62%] Built target lpmdformat
[ 63%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o
[ 63%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mdffformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/mdffformat.so
[ 63%] Built target mdffformat
[ 63%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mpqcformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/mpqcformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/moldenformat.cpp:35:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/formats/moldenformat.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/moldenformat.so
[ 63%] Built target mmodformat
[ 63%] Built target mpqcformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/msmsformat.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/formats/msmsformat.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/msiformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/msmsformat.so
[ 63%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o
[ 63%] Linking CXX shared module ../../lib/msiformat.so
[ 64%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o
[ 64%] Built target moldenformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/mmcifformat.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 64%] Linking CXX shared module ../../lib/mmcifformat.so
[ 64%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/opendxformat.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/sstream:40,
from /build/openbabel/src/openbabel-3.1.1/src/formats/opendxformat.cpp:21:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 64%] Built target msiformat
[ 64%] Built target msmsformat
[ 64%] Linking CXX shared module ../../lib/opendxformat.so
[ 64%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o
[ 65%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/outformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 65%] Built target mmcifformat
[ 65%] Linking CXX shared module ../../lib/outformat.so
[ 65%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o
[ 65%] Built target opendxformat
[ 66%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o
[ 66%] Built target outformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pcmodelformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 66%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o
[ 66%] Linking CXX shared module ../../lib/pcmodelformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pointcloudformat.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 66%] Built target pcmodelformat
[ 67%] Linking CXX shared module ../../lib/pointcloudformat.so
[ 67%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/posformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 67%] Linking CXX shared module ../../lib/posformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/shelxformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/formats/shelxformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 68%] Linking CXX shared module ../../lib/shelxformat.so
[ 68%] Built target pointcloudformat
[ 68%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o
[ 68%] Built target posformat
[ 69%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/stlformat.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/formats/stlformat.cpp:28:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/stlformat.so
[ 69%] Built target shelxformat
[ 69%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp:16:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp:511:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp:511:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp:528:64: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pqrformat.cpp:528:29:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/pqrformat.so
[ 69%] Built target stlformat
[ 69%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o
[ 69%] Built target pqrformat
[ 69%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/unichemformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/unichemformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/thermoformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/formats/thermoformat.cpp:21:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/thermoformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/tinkerformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 70%] Linking CXX shared module ../../lib/tinkerformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/viewmolformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 71%] Linking CXX shared module ../../lib/viewmolformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/smileyformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 71%] Linking CXX shared module ../../lib/smileyformat.so
[ 71%] Built target unichemformat
[ 71%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o
[ 71%] Built target thermoformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/wlnformat.cpp:18:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp:24:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp:345:46: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp:345:15:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)':
/build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp:363:54: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /build/openbabel/src/openbabel-3.1.1/src/formats/pdbqtformat.cpp:363:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 71%] Linking CXX shared module ../../lib/pdbqtformat.so
[ 71%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o
[ 72%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o
[ 72%] Built target tinkerformat
[ 72%] Built target viewmolformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xedformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 72%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o
[ 72%] Linking CXX shared module ../../lib/xedformat.so
[ 73%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o
[ 73%] Built target smileyformat
[ 73%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o
[ 73%] Built target pdbqtformat
[ 73%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/yasaraformat.cpp:34:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel-3.1.1/src/formats/yasaraformat.cpp:572:32: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel-3.1.1/src/formats/yasaraformat.cpp:572:15:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 73%] Linking CXX shared module ../../lib/yasaraformat.so
[ 73%] Built target xedformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xyzformat.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 73%] Linking CXX shared module ../../lib/xyzformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/rxnformat.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/formats/rxnformat.cpp:18:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 73%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o
[ 73%] Linking CXX shared module ../../lib/rxnformat.so
[ 73%] Built target yasaraformat
[ 74%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o
[ 74%] Built target xyzformat
[ 74%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o
[ 74%] Built target rxnformat
[ 74%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/rinchiformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/formats/rinchiformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 74%] Linking CXX shared module ../../lib/rinchiformat.so
[ 74%] Linking CXX shared module ../../lib/wlnformat.so
[ 74%] Built target rinchiformat
[ 74%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o
[ 74%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chemdrawcdx.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 74%] Linking CXX shared module ../../lib/chemdrawcdx.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/rsmiformat.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/formats/rsmiformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 74%] Linking CXX shared module ../../lib/rsmiformat.so
[ 74%] Built target chemdrawcdx
[ 75%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/png2format.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 75%] Linking CXX shared module ../../lib/png2format.so
[ 75%] Built target wlnformat
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/cdxmlformat.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 75%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o
[ 75%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o
[ 75%] Built target rsmiformat
[ 76%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o
[ 76%] Built target png2format
[ 76%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/pubchem.cpp:17:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 76%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chemkinformat.cpp:31:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /build/openbabel/src/openbabel-3.1.1/src/formats/chemkinformat.cpp:18:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 76%] Linking CXX shared module ../../lib/chemkinformat.so
[ 76%] Built target chemkinformat
[ 76%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/xml.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 77%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/xmlformat.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 77%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/xml.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 77%] Linking CXX shared module ../../lib/pubchem.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/xml.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 78%] Linking CXX shared module ../../lib/cdxmlformat.so
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/xml.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 78%] Linking CXX shared module ../../lib/xmlformat.so
[ 78%] Built target pubchem
[ 78%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o
[ 78%] Built target xmlformat
[ 78%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obabel.cpp:43:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/tools/obabel.cpp:28:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 78%] Linking CXX executable ../bin/obabel
[ 78%] Built target cdxmlformat
[ 78%] Built target obabel
[ 78%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o
[ 79%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:28,
from /build/openbabel/src/openbabel-3.1.1/tools/obconformer.cpp:25:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/forcefield.h:22:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Linking CXX executable ../bin/obconformer
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obenergy.cpp:28:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obenergy.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Linking CXX executable ../bin/obenergy
[ 79%] Built target obconformer
[ 79%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:15:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Built target obenergy
[ 79%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o
[ 79%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/cmlformat.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/cmlformat.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Linking CXX shared module ../../lib/cmlformat.so
[ 79%] Built target cmlformat
[ 79%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obfit.cpp:37:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obfit.cpp:35:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Linking CXX executable ../bin/obfit
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obfitall.cpp:40:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obfitall.cpp:35:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Linking CXX executable ../bin/obfitall
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obgen.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obgen.cpp:30:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 79%] Linking CXX executable ../bin/obgen
[ 79%] Built target obfit
[ 79%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o
[ 79%] Built target obfitall
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obminimize.cpp:28:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obminimize.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 80%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o
[ 81%] Linking CXX executable ../bin/obminimize
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_tree.h:65,
from /usr/include/c++/14.2.1/map:62,
from /build/openbabel/src/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 81%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so
[ 81%] Built target obgen
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/xml.h:21,
from /build/openbabel/src/openbabel-3.1.1/src/formats/xml/xml.cpp:15:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 81%] Linking CXX shared module ../../lib/cmlreactformat.so
[ 81%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o
[ 81%] Built target obminimize
[ 82%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o
[ 82%] Built target chemdoodlejsonformat
[ 82%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obmm.cpp:58:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obmm.cpp:54:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 82%] Linking CXX executable ../bin/obmm
[ 82%] Built target obmm
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obprobe.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obprobe.cpp:28:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 82%] Linking CXX executable ../bin/obprobe
[ 82%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/descriptor.h:27,
from /build/openbabel/src/openbabel-3.1.1/tools/obprop.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obprop.cpp:28:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 82%] Linking CXX executable ../bin/obprop
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obsym.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obsym.cpp:28:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 83%] Linking CXX executable ../bin/obsym
[ 83%] Built target cmlreactformat
[ 83%] Built target obprobe
[ 83%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o
[ 83%] Built target obprop
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obrotate.cpp:43:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obrotate.cpp:38:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 83%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o
[ 83%] Linking CXX executable ../bin/obrotate
[ 83%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obrotamer.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obrotamer.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 83%] Linking CXX executable ../bin/obrotamer
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obmolecformat.h:36,
from /build/openbabel/src/openbabel-3.1.1/src/formats/json/pubchemjsonformat.cpp:21:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/stl_tree.h:65,
from /usr/include/c++/14.2.1/map:62,
from /build/openbabel/src/openbabel-3.1.1/src/formats/json/pubchemjsonformat.cpp:17:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 83%] Linking CXX shared module ../../lib/pubchemjsonformat.so
[ 83%] Built target obsym
[ 83%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obtautomer.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obtautomer.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 83%] Linking CXX executable ../bin/obtautomer
[ 83%] Built target pubchemjsonformat
[ 83%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.cpp.o
[ 83%] Built target obtautomer
[ 83%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obthermo.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obthermo.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 83%] Linking CXX executable ../bin/obthermo
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obgrep.cpp:28:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obgrep.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 84%] Linking CXX executable ../bin/obgrep
[ 84%] Built target obthermo
[ 84%] Built target obgrep
[ 84%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o
[ 84%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o
[ 84%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obrms.cpp:33:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/tools/obrms.cpp:31:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 84%] Linking CXX executable ../bin/obrms
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obspectrophore.cpp:10:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/tools/obspectrophore.cpp:1:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/tools/obdistgen.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/base.h:25,
from /build/openbabel/src/openbabel-3.1.1/tools/obdistgen.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 84%] Linking CXX executable ../bin/obspectrophore
[ 85%] Linking CXX executable ../bin/obdistgen
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/inchiwrite.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/inchiwrite.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 85%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o
[ 85%] Built target obrotate
[ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o
[ 85%] Built target obrotamer
[ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o
[ 85%] Linking CXX executable ../bin/test_inchiwrite
[ 85%] Built target test_inchiwrite
[ 86%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o
[ 86%] Built target obrms
[ 86%] Built target obdistgen
[ 86%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o
[ 87%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o
[ 87%] Built target obspectrophore
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/aligntest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/roundtrip.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/roundtrip.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 88%] Linking CXX executable ../bin/roundtrip
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/aliastest.cpp:14:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o
[ 88%] Built target roundtrip
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/automorphismtest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/buildertest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/canonconsistenttest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/canonfragmenttest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/canonstabletest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/carspacegrouptest.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/src/GUI/./optswx.h:22,
from /build/openbabel/src/openbabel-3.1.1/src/GUI/optswx.cpp:22:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/wx-3.2/wx/stringimpl.h:66,
from /usr/include/wx-3.2/wx/unichar.h:15,
from /usr/include/wx-3.2/wx/strvararg.h:19,
from /usr/include/wx-3.2/wx/string.h:37,
from /usr/include/wx-3.2/wx/memory.h:15,
from /usr/include/wx-3.2/wx/object.h:19,
from /usr/include/wx-3.2/wx/tokenzr.h:14,
from /build/openbabel/src/openbabel-3.1.1/src/GUI/./stdwx.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/GUI/optswx.cpp:19:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/conversiontest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/cistranstest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/cifspacegrouptest.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/src/GUI/OBGUI.cpp:23:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/wx-3.2/wx/stringimpl.h:66,
from /usr/include/wx-3.2/wx/unichar.h:15,
from /usr/include/wx-3.2/wx/strvararg.h:19,
from /usr/include/wx-3.2/wx/string.h:37,
from /usr/include/wx-3.2/wx/memory.h:15,
from /usr/include/wx-3.2/wx/object.h:19,
from /usr/include/wx-3.2/wx/tokenzr.h:14,
from /build/openbabel/src/openbabel-3.1.1/src/GUI/./stdwx.h:24,
from /build/openbabel/src/openbabel-3.1.1/src/GUI/OBGUI.cpp:20:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 90%] Linking CXX executable ../../bin/obgui
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/gziptest.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/gziptest.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/implicitHtest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/addhtest.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/addhtest.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/graphsymtest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/multicmltest.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/multicmltest.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o
[ 91%] Built target obgui
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/lssrtest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/isomorphismtest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/periodictest.cpp:20:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/rotortest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/squareplanartest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/regressionstest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/smilestest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/spectrophoretest.cpp:3:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/test/spectrophoretest.cpp:1:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/shuffletest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/tetrahedraltest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/maereadertest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/stereoperceptiontest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/tetranonplanartest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/stereotest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/uniqueidtest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/tetraplanartest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/tautomertest.cpp:1:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/bond.cpp:28:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/bond.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/aromatest.cpp:28:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/aromatest.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/atom.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/atom.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/maereadertest.cpp:19:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /usr/include/c++/14.2.1/iostream:41,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:4:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/cansmi.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/cansmi.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/conversion.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/conversion.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/charge_gasteiger.cpp:13:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/charge_gasteiger.cpp:10:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/charge_mmff94.cpp:13:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/charge_mmff94.cpp:10:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/ffgaff.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/ffgaff.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/ffghemical.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/ffghemical.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/format.cpp:27:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/format.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/obtest.h:8,
from /build/openbabel/src/openbabel-3.1.1/test/ffmmff94.cpp:28:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/ffmmff94.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/ffuff.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/ffuff.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/formula.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/formula.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/internalcoord.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/internalcoord.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/formalcharge.cpp:29:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/formalcharge.cpp:26:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/invalidsmiles.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/invalidsmiles.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/iterators.cpp:32:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/iterators.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/logp_psa.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/logp_psa.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/mol.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/mol.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/pdbreadfile.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/pdbreadfile.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/phmodel.cpp:25:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/phmodel.cpp:24:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/residue.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/residue.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/ringtest.cpp:33:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/ringtest.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/smartstest.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/smartstest.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/smilesmatch.cpp:30:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/istream:40,
from /usr/include/c++/14.2.1/fstream:40,
from /build/openbabel/src/openbabel-3.1.1/test/smilesmatch.cpp:27:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/test/cmlreadfile.cpp:26:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/bits/refwrap.h:39,
from /usr/include/c++/14.2.1/vector:68,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/mol.h:44,
from /build/openbabel/src/openbabel-3.1.1/test/cmlreadfile.cpp:25:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[100%] Linking CXX executable ../bin/test_runner
[100%] Built target test_runner
In file included from /build/openbabel/src/openbabel-3.1.1/include/openbabel/format.h:22,
from /build/openbabel/src/openbabel-3.1.1/include/openbabel/obconversion.h:37,
from /build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:3416:
/build/openbabel/src/openbabel-3.1.1/include/openbabel/plugin.h:41:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
In file included from /usr/include/c++/14.2.1/string:49,
from /usr/include/c++/14.2.1/stdexcept:39,
from /build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:3317:
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp: In function 'PyObject* _wrap_new_dummy(PyObject*, PyObject*)':
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:21928:8: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:21930:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:21930:79: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp: In function 'PyObject* _wrap_delete_dummy(PyObject*, PyObject*)':
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:21934:8: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:21934:72: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:21939:34: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp: In function 'void* _p_OpenBabel__CharPtrLessTo_p_std__binary_functionT_char_const_p_char_const_p_bool_t(void*, int*)':
/build/openbabel/src/openbabel-3.1.1/scripts/python/openbabel/openbabel-python.cpp:46983:27: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
/usr/include/c++/14.2.1/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[100%] Linking CXX shared module ../lib/_openbabel.so
[100%] Built target bindings_python
==> Entering fakeroot environment...
==> Starting package_openbabel()...
-- Install configuration: "Release"
-- Installing: /build/openbabel/pkg/openbabel/usr/include/openbabel3/openbabel/babelconfig.h
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/pkgconfig/openbabel-3.pc
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS.cmake
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-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/castepformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/castepformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/crystal09format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/crystal09format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/daltonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/daltonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/dmolformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/dmolformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fchkformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fchkformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fhiaimsformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fhiaimsformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gamessformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gamessformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gaussformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gaussformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gausscubeformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gausscubeformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gausszmatformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gausszmatformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gulpformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gulpformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/hinformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/hinformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/jaguarformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/jaguarformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/molproformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/molproformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mopacformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mopacformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/nwchemformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/nwchemformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pwscfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pwscfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/qchemformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/qchemformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/siestaformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/siestaformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/turbomoleformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/turbomoleformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/vaspformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/vaspformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xsfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xsfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/zindoformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/zindoformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/maeformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/maeformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gamessukformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gamessukformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/orcaformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/orcaformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/APIInterface.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/APIInterface.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/CSRformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/CSRformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/PQSformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/PQSformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/MCDLformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/MCDLformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/alchemyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/alchemyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/acrformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/acrformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/amberformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/amberformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/balstformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/balstformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/bgfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/bgfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/boxformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/boxformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cacaoformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cacaoformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cacheformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cacheformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/carformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/carformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cccformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cccformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chem3dformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chem3dformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemdrawct.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemdrawct.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemtoolformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemtoolformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cifformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cifformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cofformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cofformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/crkformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/crkformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cssrformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cssrformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/dlpolyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/dlpolyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/exyzformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/exyzformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fastsearchformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fastsearchformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fastaformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fastaformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/featformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/featformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fhformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fhformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fingerprintformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fingerprintformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fpsformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/fpsformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/freefracformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/freefracformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/ghemicalformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/ghemicalformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gromos96format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/gromos96format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/groformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/groformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/lmpdatformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/lmpdatformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/lpmdformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/lpmdformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mdffformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mdffformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mmcifformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mmcifformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mmodformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mmodformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/moldenformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/moldenformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mpdformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mpdformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mpqcformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/mpqcformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/msiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/msiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/msmsformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/msmsformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/opendxformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/opendxformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/outformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/outformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pcmodelformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pcmodelformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pdbqtformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pdbqtformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pointcloudformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pointcloudformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/posformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/posformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pqrformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pqrformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/shelxformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/shelxformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/smileyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/smileyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/stlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/stlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/thermoformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/thermoformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/tinkerformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/tinkerformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/unichemformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/unichemformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/viewmolformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/viewmolformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/wlnformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/wlnformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xedformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xedformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xyzformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xyzformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/yasaraformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/yasaraformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/rxnformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/rxnformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemdrawcdx.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemdrawcdx.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemkinformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemkinformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/rinchiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/rinchiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/rsmiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/rsmiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/png2format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/png2format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cdxmlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cdxmlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cmlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cmlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pubchem.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pubchem.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xmlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/xmlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cmlreactformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/cmlreactformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemdoodlejsonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/chemdoodlejsonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pubchemjsonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.1.0/pubchemjsonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/libinchi.so.0.4.1
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/libinchi.so.0
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/libinchi.so.0.4.1" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/libinchi.so
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obabel
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obabel" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obconformer
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obconformer" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obenergy
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obenergy" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obfit
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obfit" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obfitall
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obfitall" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obgen
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obgen" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obminimize
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obminimize" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obmm
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obmm" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obprobe
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obprobe" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obprop
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obprop" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obrotamer
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obrotamer" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obrotate
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obrotate" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obsym
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obsym" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obtautomer
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obtautomer" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obthermo
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obthermo" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obdistgen
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obdistgen" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obgrep
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obgrep" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obspectrophore
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obspectrophore" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obrms
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obrms" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obgui
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obgui" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/roundtrip
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/roundtrip" to "/usr/lib"
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> WARNING: Package contains reference to $srcdir
usr/bin/obgui
==> Creating package "openbabel"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Starting package_python-openbabel()...
-- Install configuration: "Release"
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.13/site-packages/openbabel/_openbabel.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/python-openbabel/usr/lib/python3.13/site-packages/openbabel/_openbabel.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.13/site-packages/openbabel/__init__.py
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.13/site-packages/openbabel/openbabel.py
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.13/site-packages/openbabel/pybel.py
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> Creating package "python-openbabel"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: openbabel 3.1.1-10 (Thu 01 May 2025 07:34:41 AM MDT)
==> Cleaning up...