==> Synchronizing chroot copy [/home/leming/armv7/root] -> [leming]...done
==> Making package: openbabel 3.2.1-1 (Tue Jul 14 10:04:43 2026)
==> Retrieving sources...
-> Updating openbabel git repo...
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
openbabel ... Passed
==> Making package: openbabel 3.2.1-1 (Tue Jul 14 16:05:16 2026)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
resolving dependencies...
looking for conflicting packages...
Packages (139) adwaita-cursors-50.0-1 adwaita-fonts-50.0-1 adwaita-icon-theme-50.0-1 adwaita-icon-theme-legacy-46.2-3 at-spi2-core-2.60.5-1 avahi-1:0.9rc5-1 bubblewrap-0.11.2-1 cairo-1.18.4-1 cppdap-1.58.0-3 dav1d-1.5.3-1 dconf-0.49.0-1 default-cursors-3-1 desktop-file-utils-0.28-1 duktape-2.7.0-7 fontconfig-2:2.18.2-1 freetype2-2.14.3-1 fribidi-1.0.16-2 gdk-pixbuf2-2.44.6-2 giflib-6.1.3-1 glib-networking-1:2.80.1-1 glycin-2.1.5-2 gperftools-2.18.1-1 graphene-1.10.8-2.1 graphite-1:1.3.15-1 gsettings-desktop-schemas-50.1-1 gsettings-system-schemas-50.1-1 gssdp-1.6.6-1 gst-plugins-bad-libs-1.28.5-1 gst-plugins-base-libs-1.28.5-1 gstreamer-1.28.5-1 gtest-1.17.0-2 gtk-update-icon-cache-1:4.22.4-1 gtk3-1:3.24.52-1 gupnp-1:1.6.10-1 gupnp-igd-1.6.0-2 harfbuzz-14.2.1-1 hicolor-icon-theme-0.18-1 hidapi-0.15.0-1 highway-1.4.0-1 iso-codes-4.20.1-1 jbigkit-2.1-8 json-glib-1.10.8-1 jsoncpp-1.9.6-3 lcms2-2.19.1-1 libcloudproviders-0.4.0-1 libcolord-1.4.8-1 libcups-2:2.4.19-1 libdaemon-0.14-6 libdatrie-0.2.14-1 libdeflate-1.25-1 libdrm-2.4.134-1 libedit-20260512_3.1-1 libepoxy-1.5.10-3 libglvnd-1.7.0-3 libgudev-238-3 libice-1.1.2-1 libjpeg-turbo-3.2.0-2 libjxl-0.12.0-1 libmspack-1:1.11-1 libnice-0.1.23-1 libnotify-0.8.8-1 libpciaccess-0.19-1 libpng-1.6.58-2 libproxy-0.5.12-1 librsvg-2:2.62.3-1 libsm-1.2.6-1 libsoup3-3.6.6-2 libstemmer-3.1.1-1 libthai-0.1.30-1 libtiff-4.7.2-1 libunwind-1.8.2-1 libuv-1.52.1-1 libva-2.24.1-1 libwebp-1.6.0-2 libx11-1.8.13-1 libxau-1.0.12-1 libxcb-1.17.0-1 libxcomposite-0.4.7-1 libxcursor-1.2.3-1 libxdamage-1.1.7-1 libxdmcp-1.1.5-2 libxext-1.3.7-1 libxfixes-6.0.2-1 libxft-2.3.9-1 libxi-1.8.3-1 libxinerama-1.1.6-1 libxkbcommon-1.13.2-1 libxkbcommon-x11-1.13.2-1 libxrandr-1.5.5-1 libxrender-0.9.12-1 libxshmfence-1.3.3-1 libxtst-1.2.5-1 libxv-1.0.13-1 libxxf86vm-1.1.7-1 llvm-libs-22.1.8-1 lm_sensors-1:3.6.2-1 lzo-2.10-5 mesa-1:26.1.4-1 orc-0.4.42-1 pango-1:1.58.0-1 perl-error-0.17030-3 perl-mailtools-2.22-3 perl-timedate-2.35-1 pixman-0.46.4-1.1 python-autocommand-2.2.2-9 python-jaraco.collections-5.1.0-3 python-jaraco.context-6.1.2-1 python-jaraco.functools-4.1.0-3 python-jaraco.text-4.0.0-4 python-more-itertools-11.1.0-1 python-packaging-26.2-1 python-platformdirs-4.10.0-1 python-wheel-0.47.0-1 rhash-1.4.6-1 sdl2-compat-2.32.70-1 sdl3-3.4.12-1 shared-mime-info-2.5.1-1 spirv-tools-1:1.4.350.1-1 tinysparql-3.11.1-1 vmaf-3.2.0-1 vulkan-icd-loader-1.4.350.1-1 wayland-1.25.0-1 wxwidgets-common-3.2.11-2 xcb-proto-1.17.0-4 xkeyboard-config-2.48-1 xorg-xprop-1.2.8-1 xorgproto-2025.1-1 zlib-ng-2.3.3-1 boost-1.91.0-1 cmake-4.4.0-1 coordgen-3.0.2-4 eigen-5.0.1-2 git-2.55.0-1 inchi-1.07.5-1 maeparser-1.3.3-6 python-setuptools-1:83.0.0-1 rapidjson-1.1.0-6 swig-4.4.1-2 wxwidgets-gtk3-3.2.11-2
Total Download Size: 14.75 MiB
Total Installed Size: 885.99 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
wxwidgets-gtk3-3.2.11-2-armv7h downloading...
wxwidgets-common-3.2.11-2-armv7h downloading...
gst-plugins-bad-libs-1.28.5-1-armv7h downloading...
eigen-5.0.1-2-armv7h downloading...
swig-4.4.1-2-armv7h downloading...
inchi-1.07.5-1-armv7h downloading...
vmaf-3.2.0-1-armv7h downloading...
libnice-0.1.23-1-armv7h downloading...
coordgen-3.0.2-4-armv7h downloading...
libva-2.24.1-1-armv7h downloading...
vulkan-icd-loader-1.4.350.1-1-armv7h downloading...
gupnp-1:1.6.10-1-armv7h downloading...
rapidjson-1.1.0-6-any downloading...
maeparser-1.3.3-6-armv7h downloading...
gssdp-1.6.6-1-armv7h downloading...
libmspack-1:1.11-1-armv7h downloading...
libxkbcommon-x11-1.13.2-1-armv7h downloading...
gupnp-igd-1.6.0-2-armv7h downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing boost...
Optional dependencies for boost
python: for python bindings [installed]
installing cppdap...
installing hicolor-icon-theme...
installing jsoncpp...
Optional dependencies for jsoncpp
jsoncpp-doc: documentation
installing libuv...
installing rhash...
installing cmake...
Optional dependencies for cmake
make: for unix Makefile generator [installed]
ninja: for ninja generator
qt6-base: cmake-gui
installing maeparser...
installing coordgen...
installing eigen...
installing perl-error...
installing perl-timedate...
installing perl-mailtools...
installing zlib-ng...
installing git...
Optional dependencies for git
git-zsh-completion: upstream zsh completion
tk: gitk and git gui
openssh: ssh transport and crypto
man: show help with `git command --help`
perl-libwww: git svn
perl-term-readkey: git svn and interactive.singlekey setting
perl-io-socket-ssl: git send-email TLS support
perl-authen-sasl: git send-email TLS support
perl-cgi: gitweb (web interface) support
python: git svn & git p4 [installed]
subversion: git svn
org.freedesktop.secrets: keyring credential helper
libsecret: libsecret credential helper [installed]
less: the default pager for git
installing inchi...
installing python-more-itertools...
installing python-jaraco.functools...
installing python-jaraco.context...
installing python-autocommand...
installing python-jaraco.text...
Optional dependencies for python-jaraco.text
python-inflect: for show-newlines script
installing python-jaraco.collections...
installing python-packaging...
installing python-platformdirs...
installing python-wheel...
Optional dependencies for python-wheel
python-keyring: for wheel.signatures
python-xdg: for wheel.signatures
python-setuptools: for legacy bdist_wheel subcommand [pending]
installing python-setuptools...
installing rapidjson...
installing swig...
installing libpng...
installing freetype2...
Optional dependencies for freetype2
harfbuzz: Improved autohinting [pending]
installing fontconfig...
Creating fontconfig configuration...
Rebuilding fontconfig cache...
installing xcb-proto...
installing xorgproto...
installing libxdmcp...
installing libxau...
installing libxcb...
installing libx11...
installing libxext...
installing libxrender...
installing lzo...
installing pixman...
installing cairo...
installing bubblewrap...
installing libjpeg-turbo...
installing jbigkit...
installing libdeflate...
installing libwebp...
Optional dependencies for libwebp
libwebp-utils: WebP conversion and inspection tools
installing libtiff...
Optional dependencies for libtiff
freeglut: for using tiffgt
installing lcms2...
installing giflib...
installing libunwind...
installing gperftools...
installing gtest...
Optional dependencies for gtest
python: gmock generator [installed]
installing highway...
installing libjxl...
Optional dependencies for libjxl
java-runtime: for JNI bindings
installing dav1d...
Optional dependencies for dav1d
dav1d-doc: HTML documentation
installing graphite...
Optional dependencies for graphite
graphite-docs: Documentation
installing harfbuzz...
Optional dependencies for harfbuzz
harfbuzz-utils: utilities
installing fribidi...
installing libdatrie...
installing libthai...
installing libxft...
installing pango...
installing librsvg...
installing glycin...
Optional dependencies for glycin
libheif: Load .avif, .heic and .heif
installing shared-mime-info...
installing gdk-pixbuf2...
Optional dependencies for gdk-pixbuf2
libheif: Load .avif, .heic and .heif
libopenraw: Load .arw, .cr2, .crw, .dng, .erf, .mrw, .nef, .orf, .pef and .raf
libwmf: Load .apm and .wmf
installing gstreamer...
Optional dependencies for gstreamer
python: gst-plugins-doc-cache-generator [installed]
installing graphene...
installing iso-codes...
installing libpciaccess...
installing libdrm...
Optional dependencies for libdrm
cairo: needed for modetest tool [installed]
installing libxshmfence...
installing libxxf86vm...
installing libedit...
installing llvm-libs...
installing lm_sensors...
Optional dependencies for lm_sensors
rrdtool: for logging with sensord
perl: for sensor detection and configuration convert [installed]
installing spirv-tools...
installing default-cursors...
Optional dependencies for default-cursors
adwaita-cursors: default cursor theme [pending]
installing wayland...
installing mesa...
Optional dependencies for mesa
opengl-man-pages: for the OpenGL API man pages
installing libglvnd...
installing libgudev...
installing libxfixes...
installing libxi...
installing libxv...
installing orc...
installing gst-plugins-base-libs...
installing dconf...
installing gsettings-system-schemas...
installing duktape...
installing libproxy...
installing glib-networking...
installing libsoup3...
Optional dependencies for libsoup3
samba: Windows Domain SSO
installing gssdp...
Optional dependencies for gssdp
gtk4: gssdp-device-sniffer
installing gupnp...
Optional dependencies for gupnp
python: gupnp-binding-tool [installed]
installing gupnp-igd...
installing libnice...
Optional dependencies for libnice
gstreamer: "nice" GStreamer plugin [installed]
installing libva...
Optional dependencies for libva
intel-media-driver: backend for Intel GPUs (>= Broadwell)
libva-intel-driver: backend for Intel GPUs (<= Haswell)
libva-mesa-driver: backend for AMD and NVIDIA GPUs [installed]
installing xkeyboard-config...
installing libxkbcommon...
Optional dependencies for libxkbcommon
libxkbcommon-x11: xkbcli interactive-x11 [pending]
wayland: xkbcli interactive-wayland [installed]
installing libxkbcommon-x11...
installing vulkan-icd-loader...
Optional dependencies for vulkan-icd-loader
vulkan-driver: packaged vulkan driver
installing vmaf...
installing gst-plugins-bad-libs...
installing adwaita-fonts...
installing adwaita-icon-theme-legacy...
installing adwaita-cursors...
installing adwaita-icon-theme...
installing gsettings-desktop-schemas...
installing libxtst...
installing xorg-xprop...
installing at-spi2-core...
installing desktop-file-utils...
installing libcloudproviders...
installing libcolord...
installing libdaemon...
installing avahi...
Optional dependencies for avahi
gtk3: avahi-discover, avahi-discover-standalone, bshell, bssh, bvnc [pending]
libevent: libevent bindings [installed]
nss-mdns: NSS support for mDNS
python-dbus: avahi-bookmarks, avahi-discover
python-gobject: avahi-bookmarks, avahi-discover
python-twisted: avahi-bookmarks
installing libcups...
installing libepoxy...
installing libxcomposite...
installing libxcursor...
installing libxdamage...
installing libxinerama...
installing libxrandr...
installing json-glib...
installing libstemmer...
installing tinysparql...
installing gtk-update-icon-cache...
installing gtk3...
Optional dependencies for gtk3
evince: Default print preview command
installing libnotify...
installing libmspack...
installing libice...
installing libsm...
installing hidapi...
Optional dependencies for hidapi
libusb: for hidapi-libusb [installed]
installing sdl3...
Optional dependencies for sdl3
alsa-lib: ALSA audio driver
libpulse: PulseAudio audio driver
jack: JACK audio driver
pipewire: PipeWire audio driver
vulkan-driver: vulkan renderer
sndio: sndio audio driver
libdecor: Wayland client decorations
installing sdl2-compat...
installing wxwidgets-common...
installing wxwidgets-gtk3...
Optional dependencies for wxwidgets-gtk3
webkit2gtk-4.1: for webview support
:: Running post-transaction hooks...
( 1/13) Creating system user accounts...
Creating group 'avahi' with GID 967.
Creating user 'avahi' (Avahi mDNS/DNS-SD daemon) with UID 967 and GID 967.
Creating group 'git' with GID 966.
Creating user 'git' (git daemon user) with UID 966 and GID 966.
( 2/13) Reloading system manager configuration...
Skipped: Current root is not booted.
( 3/13) Reloading user manager configuration...
Skipped: Current root is not booted.
( 4/13) Updating the MIME type database...
( 5/13) Arming ConditionNeedsUpdate...
( 6/13) Updating fontconfig configuration...
( 7/13) Reloading system bus configuration...
Skipped: Current root is not booted.
( 8/13) Updating fontconfig cache...
( 9/13) Updating GIO module cache...
(10/13) Compiling GSettings XML schema files...
(11/13) Probing GTK3 input method modules...
(12/13) Updating icon theme caches...
(13/13) Updating the desktop file MIME type cache...
==> Retrieving sources...
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Creating working copy of openbabel git repo...
Cloning into 'openbabel'...
done.
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Switched to a new branch 'makepkg'
==> Starting build()...
-- The C compiler identification is GNU 16.1.1
-- The CXX compiler identification is GNU 16.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib/distcc/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib/distcc/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (author) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:493 (message):
The package name passed to find_package_handle_standard_args() (INCHI) does
not match the name of the calling package (Inchi). This can lead to
problems in calling code that expects find_package() result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake/modules/FindInchi.cmake:19 (find_package_handle_standard_args)
CMakeLists.txt:147 (find_package)
This warning is for project developers. Use -Wno-author to suppress it.
-- Found INCHI: /usr/lib/libinchi.so
-- Found LibXml2: /usr/lib/libxml2.so (found version "2.15.3")
-- Found ZLIB: /usr/lib/libz.so (found version "1.3.2")
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for xdrstdio_create
-- Looking for xdrstdio_create - not found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
Using built-in specs.
COLLECT_GCC=armv7l-unknown-linux-gnueabihf-gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/armv7l-unknown-linux-gnueabihf/16.1.1/lto-wrapper
Target: armv7l-unknown-linux-gnueabihf
Configured with: /build/gcc/src/gcc/configure --enable-languages=c,c++,d,fortran,go,lto,m2,objc,obj-c++,rust,cobol --enable-bootstrap --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://github.com/archlinuxarm/PKGBUILDs/issues --with-linker-hash-style=gnu --with-system-zlib --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-libstdcxx-backtrace --enable-linker-build-id --enable-lto --enable-plugin --enable-shared --enable-threads=posix --disable-libssp --disable-libstdcxx-pch --disable-multilib --disable-werror --disable-fixincludes --host=armv7l-unknown-linux-gnueabihf --build=armv7l-unknown-linux-gnueabihf --with-arch=armv7-a --with-float=hard --with-fpu=neon
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 16.1.1 20260430 (GCC)
CMake Warning (policy) at CMakeLists.txt:313 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-author or -Wno-policy to
suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found version "1.91.0") found components: program_options iostreams
CMake Warning (policy) at CMakeLists.txt:477 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-author or -Wno-policy to
suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found version "1.91.0") found components: filesystem iostreams unit_test_framework
-- maeparser include dir set as '/usr/include'
-- maeparser libraries set as '/usr/lib/libmaeparser.so'
-- Maestro formats will be supported. Using MaeParser libraries at /usr/lib/libmaeparser.so.
-- coordgen include dir set as /usr/include
-- coordgen libraries set as '/usr/lib/libcoordgen.so'
-- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/lib/libcoordgen.so.
-- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1")
-- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0")
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include
-- Checking for module 'cairo'
-- Found cairo, version 1.18.4
-- Found Cairo: /usr/lib/libcairo.so
-- Cairo found. PNG output will be supported.
-- Found Perl: /usr/bin/perl (found version "5.42.2")
CMake Warning (policy) at src/CMakeLists.txt:6 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-author or -Wno-policy to
suppress it.
-- Could NOT find Boost: missing: system (found /usr/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found suitable version "1.91.0", minimum required is "1.45.0"))
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
CMake Warning (policy) at tools/CMakeLists.txt:6 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-author or -Wno-policy to
suppress it.
-- Found Boost: /usr/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found version "1.91.0") found components: program_options iostreams
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
-- Found wxWidgets: -lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.11")
-- wxWidgets found => GUI will be built
-- Found Python: /usr/bin/python3.14 (found version "3.14.6") found components: Interpreter
-- Found SWIG: /usr/bin/swig (found suitable version "4.4.1", minimum required is "2.0")
-- Found Python: /usr/bin/python3.14 (found version "3.14.6") found components: Interpreter Development Development.Module Development.Embed
-- Python bindings will be compiled
-- Configuring done (19.4s)
-- Generating done (2.4s)
-- Build files have been written to: /build/openbabel/src/build
[ 0%] Generating atomtyp.h
[ 0%] Generating bondtyp.h
[ 0%] Generating phmodeldata.h
[ 0%] Generating torlib.h
[ 0%] Generating resdata.h
[ 0%] Generating types.h
[ 1%] Generating atomizationenergies.h
[ 1%] Generating spacegroups.h
[ 2%] Generating ringtyp.h
[ 2%] Built target data_headers
[ 2%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o
[ 2%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o
[ 2%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/bond.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/bond.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/bond.cpp: In constructor 'OpenBabel::OBBond::OBBond()':
/build/openbabel/src/openbabel/src/bond.cpp:63:18: warning: 'OpenBabel::OBBond::Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/bond.h:98:12: note: declared here
/build/openbabel/src/openbabel/src/bond.cpp:63:18: warning: 'OpenBabel::OBBond::Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/bond.h:98:12: note: declared here
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/macrocycle.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/atom.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/atom.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/include/openbabel/alias.h:20,
from /build/openbabel/src/openbabel/src/alias.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/alias.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/bondtyper.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/bondtyper.h:22,
from /build/openbabel/src/openbabel/src/bondtyper.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o
In file included from /build/openbabel/src/openbabel/src/macrocycle.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/chargemodel.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/chains.cpp:34:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/src/data_utilities.cpp:30:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/src/descriptor.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/data.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/canon.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/builder.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/builder.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/grid.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/grid.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/grid.h: In constructor 'OpenBabel::OBFloatGrid::OBFloatGrid()':
/build/openbabel/src/openbabel/include/openbabel/grid.h:115:21: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:115:21: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h: In destructor 'virtual OpenBabel::OBFloatGrid::~OBFloatGrid()':
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:11: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:11: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:28: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:28: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/src/grid.cpp: In member function 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)':
/build/openbabel/src/openbabel/src/grid.cpp:82:5: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/src/grid.cpp:82:5: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/griddata.h:26,
from /build/openbabel/src/openbabel/src/griddata.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/griddata.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/grid.h: In constructor 'OpenBabel::OBFloatGrid::OBFloatGrid()':
/build/openbabel/src/openbabel/include/openbabel/grid.h:115:21: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:115:21: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h: In destructor 'virtual OpenBabel::OBFloatGrid::~OBFloatGrid()':
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:11: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:11: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:28: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:28: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/src/griddata.cpp: In member function 'void OpenBabel::OBGridData::GetOriginVector(double*) const':
/build/openbabel/src/openbabel/src/griddata.cpp:194:24: warning: 'void OpenBabel::OBFloatGrid::GetMin(double*)' is deprecated: Use GetMin() instead [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:132:10: note: declared here
/build/openbabel/src/openbabel/src/griddata.cpp: In member function 'void OpenBabel::OBGridData::SetLimits(const double*, const double*, const double*, const double*)':
/build/openbabel/src/openbabel/src/griddata.cpp:235:27: warning: 'void OpenBabel::OBFloatGrid::SetLimits(const double*, const double*, const double*, const double*)' is deprecated: Use vector version instead [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:229:10: note: declared here
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/graphsym.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/graphsym.cpp:30:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/generic.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/generic.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/kekulize.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/src/isomorphism.cpp:3:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/molchrg.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/src/forcefield.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/forcefield.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/src/forcefield.cpp:34:
/build/openbabel/src/openbabel/include/openbabel/grid.h: In constructor 'OpenBabel::OBFloatGrid::OBFloatGrid()':
/build/openbabel/src/openbabel/include/openbabel/grid.h:115:21: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:115:21: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h: In destructor 'virtual OpenBabel::OBFloatGrid::~OBFloatGrid()':
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:11: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:11: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:28: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/include/openbabel/grid.h:118:28: warning: 'OpenBabel::OBFloatGrid::_ival' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/grid.h:105:25: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintEnergy()':
/build/openbabel/src/openbabel/src/forcefield.cpp:526:53: warning: 'static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/forcefield.h:1569:19: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp:543:54: warning: 'static double OpenBabel::OBForceField::VectorAngleDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/forcefield.h:1585:19: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp:562:56: warning: 'static double OpenBabel::OBForceField::VectorTorsionDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/forcefield.h:1618:19: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::SystematicRotorSearchInitialize(unsigned int, bool)':
/build/openbabel/src/openbabel/src/forcefield.cpp:1224:19: warning: 'void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]
In file included from /build/openbabel/src/openbabel/include/openbabel/rotamer.h:26,
from /build/openbabel/src/openbabel/src/forcefield.cpp:32:
/build/openbabel/src/openbabel/include/openbabel/rotor.h:625:10: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)':
/build/openbabel/src/openbabel/src/forcefield.cpp:1345:19: warning: 'void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/rotor.h:625:10: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp: In member function 'void OpenBabel::OBForceField::RandomRotorSearchInitialize(unsigned int, unsigned int, bool)':
/build/openbabel/src/openbabel/src/forcefield.cpp:1492:19: warning: 'void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/rotor.h:625:10: note: declared here
/build/openbabel/src/openbabel/src/forcefield.cpp: In member function 'void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)':
/build/openbabel/src/openbabel/src/forcefield.cpp:1678:19: warning: 'void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/rotor.h:625:10: note: declared here
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obfunctions.h:22,
from /build/openbabel/src/openbabel/src/obfunctions.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/src/obutil.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/obiter.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/mol.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/mol.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /usr/include/c++/16.1.1/algorithm:63,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:24:
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/bits/stl_algo.h:61:
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = pair<OpenBabel::OBAtom*, double>; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38,
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1913:25,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::OBMol::ConnectTheDots()' at /build/openbabel/src/openbabel/src/mol.cpp:3044:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1913:25,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::OBMol::ConnectTheDots()' at /build/openbabel/src/openbabel/src/mol.cpp:3044:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::OBMol::ConnectTheDots()' at /build/openbabel/src/openbabel/src/mol.cpp:3044:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38,
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1913:25,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::OBMol::PerceiveBondOrders()' at /build/openbabel/src/openbabel/src/mol.cpp:3463:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1913:25,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::OBMol::PerceiveBondOrders()' at /build/openbabel/src/openbabel/src/mol.cpp:3463:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::OBMol::PerceiveBondOrders()' at /build/openbabel/src/openbabel/src/mol.cpp:3463:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/patty.h:23,
from /build/openbabel/src/openbabel/src/patty.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/parsmart.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/parsmart.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/src/parsmart.cpp: In destructor 'virtual OpenBabel::OBSmartsPattern::~OBSmartsPattern()':
/build/openbabel/src/openbabel/src/parsmart.cpp:1807:37: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/src/parsmart.cpp:1807:37: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/phmodel.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/src/phmodel.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/include/openbabel/query.h:27,
from /build/openbabel/src/openbabel/src/query.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/mcdlutil.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/pointgroup.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/reactionfacade.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/residue.cpp:34:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/rotamer.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/rotamer.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/spectrophore.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/ring.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/ring.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/ring.cpp: In constructor 'OpenBabel::OBRingSearch::OBRingSearch()':
/build/openbabel/src/openbabel/src/ring.cpp:484:62: warning: 'OpenBabel::OBRingSearch::_bonds' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/ring.h:124:41: note: declared here
/build/openbabel/src/openbabel/src/ring.cpp:484:62: warning: 'OpenBabel::OBRingSearch::_bonds' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/ring.h:124:41: note: declared here
/build/openbabel/src/openbabel/src/ring.cpp:484:62: warning: 'OpenBabel::OBRingSearch::_bonds' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/ring.h:124:41: note: declared here
/build/openbabel/src/openbabel/src/ring.cpp: In destructor 'OpenBabel::OBRingSearch::~OBRingSearch()':
/build/openbabel/src/openbabel/src/ring.cpp:521:31: warning: 'OpenBabel::OBRingSearch::_bonds' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/ring.h:124:41: note: declared here
/build/openbabel/src/openbabel/src/ring.cpp:521:31: warning: 'OpenBabel::OBRingSearch::_bonds' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/ring.h:124:41: note: declared here
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/rotor.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/rotor.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/src/rotor.cpp: In member function 'bool OpenBabel::OBRotorList::SetEvalAtoms(OpenBabel::OBMol&)':
/build/openbabel/src/openbabel/src/rotor.cpp:335:28: warning: 'void OpenBabel::OBRotor::SetEvalAtoms(OpenBabel::OBBitVec&)' is deprecated [-Wdeprecated-declarations]
In file included from /build/openbabel/src/openbabel/src/rotor.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/rotor.h:435:10: note: declared here
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/tautomer.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/src/transform.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/transform.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/typer.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/typer.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/confsearch.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/rotor.h:23,
from /build/openbabel/src/openbabel/include/openbabel/rotamer.h:26,
from /build/openbabel/src/openbabel/src/confsearch.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)':
/build/openbabel/src/openbabel/src/confsearch.cpp:361:19: warning: 'void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/rotor.h:625:10: note: declared here
In file included from /usr/include/c++/16.1.1/algorithm:63,
from /usr/include/eigen3/Eigen/Core:95,
from /build/openbabel/src/openbabel/include/openbabel/math/align.h:26,
from /build/openbabel/src/openbabel/src/confsearch.cpp:27:
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/bits/stl_algo.h:61:
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Distance = int; _Tp = pair<vector<OpenBabel::vector3>, double>; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]',
inlined from 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1876:25,
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1892:27:
/usr/include/c++/16.1.1/bits/stl_algo.h:1593:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector<double>&, OBDiversePoses*, bool)' at /build/openbabel/src/openbabel/src/confsearch.cpp:301:7:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<vector<OpenBabel::vector3>, double>*, vector<pair<vector<OpenBabel::vector3>, double> > >; _Compare = bool (*)(const pair<vector<OpenBabel::vector3>, double>&, const pair<vector<OpenBabel::vector3>, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'void OpenBabel::UpdateConformersFromTree(OBMol*, std::vector<double>&, OBDiversePoses*, bool)' at /build/openbabel/src/openbabel/src/confsearch.cpp:301:7:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/src/math/matrix3x3.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/depict/depict.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/depict/depict.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /usr/include/c++/16.1.1/algorithm:63,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:24:
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/bits/stl_algo.h:61:
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = pair<OpenBabel::OBAtom*, double>; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38,
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1913:25,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)' at /build/openbabel/src/openbabel/src/depict/depict.cpp:554:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1913:25,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)' at /build/openbabel/src/openbabel/src/depict/depict.cpp:554:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBAtom*, double>*, vector<pair<OpenBabel::OBAtom*, double> > >; _Compare = bool (*)(const pair<OpenBabel::OBAtom*, double>&, const pair<OpenBabel::OBAtom*, double>&)]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)' at /build/openbabel/src/openbabel/src/depict/depict.cpp:554:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/rotor.h:23,
from /build/openbabel/src/openbabel/include/openbabel/conformersearch.h:25,
from /build/openbabel/src/openbabel/src/conformersearch.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/include/openbabel/rotamer.h:27,
from /build/openbabel/src/openbabel/include/openbabel/conformersearch.h:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/algorithm:63,
from /usr/include/eigen3/Eigen/Core:95,
from /build/openbabel/src/openbabel/include/openbabel/math/align.h:26,
from /build/openbabel/src/openbabel/src/conformersearch.cpp:21:
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/mol.h:46,
from /build/openbabel/src/openbabel/include/openbabel/conformersearch.h:24:
/usr/include/c++/16.1.1/bits/stl_tree.h: In member function 'std::pair<typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits<typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits<typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:2952:5: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/bits/stl_algo.h:61:
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = OpenBabel::CompareConformerHighScore]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = OpenBabel::CompareConformerHighScore]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = OpenBabel::CompareConformerLowScore]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = OpenBabel::CompareConformerLowScore]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'double OpenBabel::OBConformerSearch::MakeSelection()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:558:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'double OpenBabel::OBConformerSearch::MakeSelection()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:558:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'double OpenBabel::OBConformerSearch::MakeSelection()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:560:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'double OpenBabel::OBConformerSearch::MakeSelection()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:560:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'int OpenBabel::OBConformerSearch::score_population()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:987:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerHighScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'int OpenBabel::OBConformerSearch::score_population()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:987:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'int OpenBabel::OBConformerSearch::score_population()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:989:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, vector<OpenBabel::ConformerScore> >; _Compare = OpenBabel::CompareConformerLowScore]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'int OpenBabel::OBConformerSearch::score_population()' at /build/openbabel/src/openbabel/src/conformersearch.cpp:989:16:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/src/math/transform3d.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/src/math/spacegroup.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o
In file included from /build/openbabel/src/openbabel/src/math/vector3.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/stereo/cistrans.cpp:3:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/stereo/facade.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/stereo/gen3dstereohelper.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/distgeom.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/distgeom.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/math/align.h:23,
from /build/openbabel/src/openbabel/src/math/align.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/stereo/perception.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/stereo/perception.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 16%] Linking CXX shared library ../lib/libopenbabel.so
[ 16%] Built target openbabel
[ 16%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o
[ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o
[ 16%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o
[ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o
[ 17%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o
[ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o
[ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/eem.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/fingerprints/finger2.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o
[ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o
[ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/gasteiger.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o
[ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o
In file included from /build/openbabel/src/openbabel/src/fingerprints/finger3.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/none.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/descriptors/groupcontrib.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/descriptors/groupcontrib.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o
[ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/forcefields/forcefieldgaff.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/forcefields/forcefieldgaff.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o
[ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/fingerprints/fingerecfp.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 19%] Linking CXX shared module ../lib/plugin_fingerprints.so
In file included from /build/openbabel/src/openbabel/src/descriptors/filters.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 19%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/mmff94.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/src/ops/canonical.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o
[ 20%] Built target plugin_fingerprints
[ 20%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o
In file included from /build/openbabel/src/openbabel/src/descriptors/smartsdescriptors.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 20%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/src/ops/changecell.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o
[ 22%] Linking CXX shared module ../lib/plugin_descriptors.so
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/fromfile.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/plugin.h:27,
from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:24:
/usr/include/c++/16.1.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:3250:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/map:65:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)' at /build/openbabel/src/openbabel/src/charges/fromfile.cpp:129:32:
/usr/include/c++/16.1.1/bits/stl_map.h:559:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)' at /build/openbabel/src/openbabel/src/charges/fromfile.cpp:137:32:
/usr/include/c++/16.1.1/bits/stl_map.h:559:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
[ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/src/forcefields/forcefieldghemical.h:23,
from /build/openbabel/src/openbabel/src/forcefields/forcefieldghemical.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/forcefields/forcefieldghemical.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 22%] Built target plugin_descriptors
[ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o
[ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o
[ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o
[ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o
[ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/ops/fillUC.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/forcefields/forcefieldmmff94.cpp:35:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/forcefields/forcefieldmmff94.cpp:37:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/eqeq.h:22,
from /build/openbabel/src/openbabel/src/charges/eqeq.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 22%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o
[ 22%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/src/ops/forcefield.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/src/ops/gen3d.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/qeq.h:22,
from /build/openbabel/src/openbabel/src/charges/qeq.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 23%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/src/charges/qtpie.h:22,
from /build/openbabel/src/openbabel/src/charges/qtpie.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 23%] Linking CXX shared module ../lib/plugin_charges.so
[ 23%] Built target plugin_charges
[ 23%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/forcefields/forcefielduff.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/forcefields/forcefielduff.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/src/forcefields/forcefielduff.cpp: In member function 'void OpenBabel::OBFFElectrostaticCalculationUFF::Compute()':
/build/openbabel/src/openbabel/src/forcefields/forcefielduff.cpp:516:49: warning: 'static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)' is deprecated [-Wdeprecated-declarations]
In file included from /build/openbabel/src/openbabel/src/forcefields/forcefielduff.h:24,
from /build/openbabel/src/openbabel/src/forcefields/forcefielduff.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/forcefield.h:1569:19: note: declared here
[ 23%] Linking CXX shared module ../lib/plugin_forcefields.so
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o
[ 23%] Built target plugin_forcefields
[ 23%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/smilesformat.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)':
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp:2902:32: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/ios:46,
from /usr/include/c++/16.1.1/bits/ostream.h:43,
from /usr/include/c++/16.1.1/ostream:42,
from /usr/include/c++/16.1.1/iostream:43,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:24,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/smilesformat.cpp:23:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)' at /build/openbabel/src/openbabel/src/formats/smilesformat.cpp:2902:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)':
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp:2894:32: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)' at /build/openbabel/src/openbabel/src/formats/smilesformat.cpp:2894:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::string&, OpenBabel::OBBitVec&, std::vector<unsigned int>&, std::vector<unsigned int>&)':
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp:3568:31: warning: '%d' directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=]
/build/openbabel/src/openbabel/src/formats/smilesformat.cpp:3568:31: note: directive argument in the range [-2147483648, 99]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::string&, OpenBabel::OBBitVec&, std::vector<unsigned int>&, std::vector<unsigned int>&)' at /build/openbabel/src/openbabel/src/formats/smilesformat.cpp:3568:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 12 bytes into a destination of size 8
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX shared module ../../lib/smilesformat.so
[ 23%] Built target smilesformat
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o
[ 23%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mol2format.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 23%] Linking CXX shared module ../../lib/mol2format.so
[ 23%] Built target mol2format
[ 23%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/src/ops/neutralize.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o
[ 23%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obfunctions.h:22,
from /build/openbabel/src/openbabel/src/formats/pdbformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp:689:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/ios:46,
from /usr/include/c++/16.1.1/bits/ostream.h:43,
from /usr/include/c++/16.1.1/ostream:42,
from /usr/include/c++/16.1.1/iostream:43,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:24,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/pdbformat.cpp:17:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/pdbformat.cpp:689:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp:709:64: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/pdbformat.cpp:709:29:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp:747:34: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=]
/build/openbabel/src/openbabel/src/formats/pdbformat.cpp:747:34: note: directive argument in the range [-32768, 32767]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/pdbformat.cpp:747:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX shared module ../../lib/pdbformat.so
[ 23%] Built target pdbformat
[ 23%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mdlformat.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()':
/build/openbabel/src/openbabel/src/formats/mdlformat.cpp:1734:22: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=]
/build/openbabel/src/openbabel/src/formats/mdlformat.cpp:1734:22: note: directive argument in the range [-2147483648, 2147483547]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/iomanip:47,
from /build/openbabel/src/openbabel/src/formats/mdlformat.cpp:27:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'std::string OpenBabel::MDLFormat::GetTimeDate()' at /build/openbabel/src/openbabel/src/formats/mdlformat.cpp:1734:13:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX shared module ../../lib/mdlformat.so
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o
[ 23%] Built target mdlformat
[ 23%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o
[ 23%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/inchiformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 24%] Linking CXX shared module ../../lib/inchiformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/asciiformat.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o
[ 25%] Built target inchiformat
[ 25%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o
[ 25%] Linking CXX shared module ../../lib/copyformat.so
[ 26%] Linking CXX shared module ../../lib/asciiformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/phmodel.h:23,
from /build/openbabel/src/openbabel/include/openbabel/optransform.h:19,
from /build/openbabel/src/openbabel/src/ops/optransform.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o
[ 26%] Built target copyformat
[ 26%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o
[ 26%] Built target asciiformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/ops/partialcharges.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 26%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/MNAformat.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/src/formats/MNAformat.cpp:37:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 26%] Linking CXX shared module ../../lib/MNAformat.so
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o
[ 27%] Linking CXX shared module ../../lib/nulformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/molreport.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 27%] Linking CXX shared module ../../lib/molreport.so
[ 27%] Built target MNAformat
[ 27%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o
[ 27%] Built target nulformat
[ 27%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o
[ 27%] Built target molreport
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o
In file included from /usr/include/c++/16.1.1/bits/stl_algo.h:61,
from /usr/include/c++/16.1.1/algorithm:63,
from /build/openbabel/src/openbabel/src/ops/deferred.h:5,
from /build/openbabel/src/openbabel/src/ops/sort.cpp:24:
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Distance = int; _Tp = pair<OpenBabel::OBBase*, double>; _Compare = OpenBabel::Order<double>]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:88:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Size = int; _Compare = OpenBabel::Order<double>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Size = int; _Compare = OpenBabel::Order<double>]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1897:38:
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1863:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Size = int; _Compare = OpenBabel::Order<double>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'virtual bool OpenBabel::OpSort::ProcessVec(std::vector<OpenBabel::OBBase*>&)' at /build/openbabel/src/openbabel/src/ops/sort.cpp:123:14:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<OpenBabel::OBBase*, double>*, vector<pair<OpenBabel::OBBase*, double> > >; _Compare = OpenBabel::Order<double>]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4849:18,
inlined from 'virtual bool OpenBabel::OpSort::ProcessVec(std::vector<OpenBabel::OBBase*>&)' at /build/openbabel/src/openbabel/src/ops/sort.cpp:123:14:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/depict/depict.h:23,
from /build/openbabel/src/openbabel/src/formats/painterformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 28%] Linking CXX shared module ../../lib/painterformat.so
In file included from /build/openbabel/src/openbabel/src/ops/opisomorph.cpp:15:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/include/openbabel/query.h:27,
from /build/openbabel/src/openbabel/src/ops/opisomorph.h:18,
from /build/openbabel/src/openbabel/src/ops/opisomorph.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o
In file included from /build/openbabel/src/openbabel/src/ops/ophighlight.cpp:16:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/src/ops/ophighlight.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 28%] Built target painterformat
[ 28%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o
[ 29%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/ops/conformer.cpp:35:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/rotor.h:23,
from /build/openbabel/src/openbabel/include/openbabel/conformersearch.h:25,
from /build/openbabel/src/openbabel/src/ops/conformer.cpp:37:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 29%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/src/ops/opconfab.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 30%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/povrayformat.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 30%] Linking CXX shared module ../../lib/povrayformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/reportformat.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 30%] Linking CXX shared module ../../lib/reportformat.so
[ 30%] Built target povrayformat
[ 30%] Built target reportformat
[ 30%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o
[ 30%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o
[ 30%] Linking CXX shared module ../../lib/textformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/math/align.h:23,
from /build/openbabel/src/openbabel/src/ops/opalign.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/src/ops/opalign.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 30%] Linking CXX shared module ../lib/plugin_ops.so
In file included from /build/openbabel/src/openbabel/include/openbabel/depict/depict.h:23,
from /build/openbabel/src/openbabel/src/formats/svgformat.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 31%] Linking CXX shared module ../../lib/svgformat.so
[ 31%] Built target textformat
[ 31%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o
[ 31%] Built target plugin_ops
[ 31%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o
[ 31%] Built target svgformat
[ 32%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o
[ 32%] Linking CXX shared module ../../lib/titleformat.so
[ 32%] Built target titleformat
[ 32%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o
[ 32%] Linking CXX shared module ../../lib/pngformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/acesformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 32%] Linking CXX shared module ../../lib/acesformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/abinitformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 32%] Built target pngformat
[ 32%] Linking CXX shared module ../../lib/abinitformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/math/align.h:23,
from /build/openbabel/src/openbabel/src/formats/confabreport.cpp:35:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/bits/stl_algo.h:61,
from /usr/include/c++/16.1.1/algorithm:63,
from /usr/include/eigen3/Eigen/Core:95,
from /build/openbabel/src/openbabel/include/openbabel/math/align.h:26:
/usr/include/c++/16.1.1/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = less<void>]':
/usr/include/c++/16.1.1/bits/stl_heap.h:228:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = less<void>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = less<void>]':
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1884:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1898:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = less<void>]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4817:18,
inlined from 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)' at /build/openbabel/src/openbabel/src/formats/confabreport.cpp:112:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1913:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = less<void>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = less<void>]' at /usr/include/c++/16.1.1/bits/stl_algo.h:1916:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/16.1.1/bits/stl_algo.h:4817:18,
inlined from 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)' at /build/openbabel/src/openbabel/src/formats/confabreport.cpp:112:9:
/usr/include/c++/16.1.1/bits/stl_algo.h:1821:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_algo.h:1826:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
[ 32%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o
[ 33%] Linking CXX shared module ../../lib/confabreport.so
[ 33%] Built target acesformat
[ 33%] Built target abinitformat
[ 34%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o
[ 35%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o
[ 35%] Built target confabreport
[ 35%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/adfformat.cpp:38:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 35%] Linking CXX shared module ../../lib/adfformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/aoforceformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 35%] Linking CXX shared module ../../lib/aoforceformat.so
[ 35%] Built target adfformat
[ 35%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/castepformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 35%] Linking CXX shared module ../../lib/castepformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/daltonformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 35%] Linking CXX shared module ../../lib/daltonformat.so
[ 35%] Built target aoforceformat
[ 35%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/crystal09format.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 35%] Linking CXX shared module ../../lib/crystal09format.so
[ 35%] Built target castepformat
[ 35%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o
[ 35%] Built target daltonformat
[ 35%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o
[ 35%] Built target crystal09format
[ 35%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/dmolformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 35%] Linking CXX shared module ../../lib/dmolformat.so
[ 35%] Built target dmolformat
[ 35%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/fhiaimsformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 36%] Linking CXX shared module ../../lib/fhiaimsformat.so
[ 36%] Built target fhiaimsformat
[ 36%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/fchkformat.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 36%] Linking CXX shared module ../../lib/fchkformat.so
[ 36%] Built target fchkformat
[ 36%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gausscubeformat.cpp:32:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 36%] Linking CXX shared module ../../lib/gausscubeformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gausszmatformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:31,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/gausszmatformat.cpp:16:
/usr/include/c++/16.1.1/bits/stl_tree.h: In function 'std::pair<typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits<typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits<typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:2952:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
[ 36%] Linking CXX shared module ../../lib/gausszmatformat.so
[ 36%] Built target gausscubeformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gulpformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 37%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o
[ 37%] Linking CXX shared module ../../lib/gulpformat.so
[ 37%] Built target gausszmatformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gamessformat.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 37%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o
[ 37%] Linking CXX shared module ../../lib/gamessformat.so
[ 37%] Built target gulpformat
[ 37%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o
[ 37%] Built target gamessformat
[ 38%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gaussformat.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/gaussformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/hinformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/hinformat.so
[ 39%] Built target gaussformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/jaguarformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/jaguarformat.so
[ 39%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o
[ 39%] Built target hinformat
[ 39%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o
[ 39%] Built target jaguarformat
[ 39%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/molproformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/molproformat.so
[ 39%] Built target molproformat
[ 39%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mopacformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/mopacformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/pwscfformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/pwscfformat.so
[ 39%] Built target mopacformat
[ 39%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o
[ 39%] Built target pwscfformat
[ 39%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/qchemformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/qchemformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/nwchemformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/nwchemformat.so
[ 39%] Built target qchemformat
[ 39%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o
[ 39%] Built target nwchemformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/siestaformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/siestaformat.so
[ 39%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/turbomoleformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 39%] Linking CXX shared module ../../lib/turbomoleformat.so
[ 39%] Built target siestaformat
[ 39%] Building CXX object src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o
[ 39%] Built target turbomoleformat
[ 40%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/xsfformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 40%] Linking CXX shared module ../../lib/xsfformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/zindoformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 41%] Linking CXX shared module ../../lib/zindoformat.so
[ 41%] Built target xsfformat
[ 41%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o
[ 41%] Built target zindoformat
[ 41%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/vaspformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 41%] Linking CXX shared module ../../lib/vaspformat.so
[ 41%] Linking CXX shared module ../../lib/APIInterface.so
[ 41%] Built target vaspformat
[ 41%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o
[ 41%] Built target APIInterface
[ 41%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/maeformat.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 41%] Linking CXX shared module ../../lib/maeformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/CSRformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 41%] Linking CXX shared module ../../lib/CSRformat.so
[ 41%] Built target maeformat
[ 41%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/PQSformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 41%] Linking CXX shared module ../../lib/PQSformat.so
[ 41%] Built target CSRformat
[ 41%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o
[ 41%] Built target PQSformat
[ 41%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/alchemyformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 41%] Linking CXX shared module ../../lib/alchemyformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gamessukformat.cpp:16:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:31,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/gamessukformat.cpp:14:
/usr/include/c++/16.1.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:3250:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/map:65:
/usr/include/c++/16.1.1/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'bool OpenBabel::GAMESSUKFormat::ReadVariables(std::istream&, double, std::string)' at /build/openbabel/src/openbabel/src/formats/gamessukformat.cpp:480:26:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
[ 41%] Linking CXX shared module ../../lib/gamessukformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/acrformat.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 42%] Linking CXX shared module ../../lib/acrformat.so
[ 42%] Built target alchemyformat
[ 42%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o
[ 42%] Built target gamessukformat
[ 42%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o
[ 42%] Built target acrformat
[ 42%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/orcaformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 43%] Linking CXX shared module ../../lib/orcaformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/amberformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 43%] Built target orcaformat
[ 44%] Linking CXX shared module ../../lib/amberformat.so
[ 44%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/balstformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 44%] Linking CXX shared module ../../lib/balstformat.so
[ 44%] Built target amberformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/MCDLformat.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 44%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/bgfformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 45%] Linking CXX shared module ../../lib/MCDLformat.so
[ 45%] Linking CXX shared module ../../lib/bgfformat.so
[ 45%] Built target balstformat
[ 45%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o
[ 45%] Built target MCDLformat
[ 45%] Built target bgfformat
[ 45%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o
[ 45%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/boxformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 45%] Linking CXX shared module ../../lib/boxformat.so
[ 45%] Built target boxformat
[ 45%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/cacheformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/cacaoformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 45%] Linking CXX shared module ../../lib/cacheformat.so
[ 46%] Linking CXX shared module ../../lib/cacaoformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/cccformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 46%] Linking CXX shared module ../../lib/cccformat.so
[ 46%] Built target cacheformat
[ 46%] Built target cacaoformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/carformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 46%] Linking CXX shared module ../../lib/carformat.so
[ 47%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o
[ 47%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o
[ 47%] Built target cccformat
[ 47%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o
[ 47%] Built target carformat
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/src/formats/chem3dformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/formats/chem3dformat.cpp: In static member function 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)':
/build/openbabel/src/openbabel/src/formats/chem3dformat.cpp:322:51: warning: '%d' directive output may be truncated writing between 1 and 9 bytes into a region of size 4 [-Wformat-truncation=]
/build/openbabel/src/openbabel/src/formats/chem3dformat.cpp:322:51: note: directive argument in the range [0, 536873461]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/ios:46,
from /usr/include/c++/16.1.1/bits/ostream.h:43,
from /usr/include/c++/16.1.1/ostream:42,
from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:24:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)' at /build/openbabel/src/openbabel/src/formats/chem3dformat.cpp:322:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 10 bytes into a destination of size 4
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 47%] Linking CXX shared module ../../lib/chem3dformat.so
[ 47%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o
[ 47%] Built target chem3dformat
[ 48%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/chemdrawct.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 48%] Linking CXX shared module ../../lib/chemdrawct.so
[ 48%] Built target chemdrawct
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/chemtoolformat.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 48%] Linking CXX shared module ../../lib/chemtoolformat.so
[ 48%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o
[ 48%] Built target chemtoolformat
[ 48%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/chemdrawcdx.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 48%] Linking CXX shared module ../../lib/chemdrawcdx.so
[ 48%] Built target chemdrawcdx
[ 48%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/chemkinformat.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/crkformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 48%] Linking CXX shared module ../../lib/chemkinformat.so
[ 48%] Linking CXX shared module ../../lib/crkformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/cofformat.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 48%] Linking CXX shared module ../../lib/cofformat.so
[ 48%] Built target chemkinformat
[ 48%] Built target crkformat
[ 48%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o
[ 48%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o
[ 48%] Built target cofformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/cssrformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 48%] Linking CXX shared module ../../lib/cssrformat.so
[ 48%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o
[ 48%] Built target cssrformat
[ 48%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/cifformat.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:31,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/cifformat.cpp:24:
/usr/include/c++/16.1.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:3250:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/map:65:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'void OpenBabel::CIFData::ExtractCharges()' at /build/openbabel/src/openbabel/src/formats/cifformat.cpp:892:39:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'void OpenBabel::CIFData::ExtractCharges()' at /build/openbabel/src/openbabel/src/formats/cifformat.cpp:903:37:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
[ 48%] Linking CXX shared module ../../lib/cifformat.so
[ 48%] Built target cifformat
[ 49%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/exyzformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 49%] Linking CXX shared module ../../lib/exyzformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/fastaformat.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 50%] Linking CXX shared module ../../lib/fastaformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/src/formats/fastsearchformat.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 50%] Linking CXX shared module ../../lib/fastsearchformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/dlpolyformat.cpp:16:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 51%] Linking CXX shared module ../../lib/dlpolyformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/featformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 51%] Built target exyzformat
[ 51%] Linking CXX shared module ../../lib/featformat.so
[ 51%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o
[ 51%] Built target fastsearchformat
[ 51%] Built target fastaformat
[ 51%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o
[ 51%] Built target dlpolyformat
[ 51%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o
[ 51%] Built target featformat
[ 51%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o
[ 51%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/fhformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 51%] Linking CXX shared module ../../lib/fhformat.so
[ 51%] Built target fhformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/fpsformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 51%] Linking CXX shared module ../../lib/fpsformat.so
[ 51%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/fingerprintformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 51%] Linking CXX shared module ../../lib/fingerprintformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/freefracformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 52%] Linking CXX shared module ../../lib/freefracformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/ghemicalformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 52%] Linking CXX shared module ../../lib/ghemicalformat.so
[ 52%] Built target fpsformat
[ 52%] Built target fingerprintformat
[ 52%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o
[ 52%] Built target freefracformat
[ 52%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o
[ 52%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o
[ 52%] Built target ghemicalformat
[ 53%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/gromos96format.cpp:56:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 53%] Linking CXX shared module ../../lib/gromos96format.so
[ 53%] Built target gromos96format
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/groformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 54%] Linking CXX shared module ../../lib/groformat.so
[ 54%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/lmpdatformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:31,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/16.1.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:3250:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/map:65:
/usr/include/c++/16.1.1/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/lmpdatformat.cpp:104:21:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/lmpdatformat.cpp:327:30:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/lmpdatformat.cpp:329:30:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/lmpdatformat.cpp:374:28:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
[ 55%] Linking CXX shared module ../../lib/lmpdatformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/lpmdformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 55%] Linking CXX shared module ../../lib/lpmdformat.so
[ 55%] Built target groformat
[ 55%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o
[ 55%] Built target lmpdatformat
[ 55%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o
[ 55%] Built target lpmdformat
[ 55%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mdffformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /usr/include/c++/16.1.1/map:64,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:31,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/mdffformat.cpp:17:
/usr/include/c++/16.1.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/16.1.1/bits/stl_tree.h:3250:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/map:65:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/mdffformat.cpp:477:23:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/mdffformat.cpp:479:26:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/mdffformat.cpp:480:25:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/mdffformat.cpp:512:53:
/usr/include/c++/16.1.1/bits/stl_map.h:540:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
[ 55%] Linking CXX shared module ../../lib/mdffformat.so
[ 55%] Built target mdffformat
[ 55%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mmodformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 55%] Linking CXX shared module ../../lib/mmodformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mpdformat.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 55%] Linking CXX shared module ../../lib/mpdformat.so
[ 55%] Built target mmodformat
[ 55%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o
[ 55%] Built target mpdformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mmcifformat.cpp:21:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/moldenformat.cpp:38:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 56%] Linking CXX shared module ../../lib/mmcifformat.so
[ 57%] Linking CXX shared module ../../lib/moldenformat.so
[ 57%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/mpqcformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 58%] Linking CXX shared module ../../lib/mpqcformat.so
[ 58%] Built target mmcifformat
[ 58%] Built target moldenformat
[ 58%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o
[ 58%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o
[ 58%] Built target mpqcformat
[ 59%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/msmsformat.cpp:30:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/msiformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 59%] Linking CXX shared module ../../lib/msmsformat.so
[ 59%] Linking CXX shared module ../../lib/msiformat.so
[ 59%] Built target msmsformat
[ 59%] Built target msiformat
[ 59%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o
[ 59%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/src/formats/outformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 59%] Linking CXX shared module ../../lib/outformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/opendxformat.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 59%] Linking CXX shared module ../../lib/opendxformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/pcmodelformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 59%] Linking CXX shared module ../../lib/pcmodelformat.so
[ 59%] Built target outformat
[ 59%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o
[ 59%] Built target opendxformat
[ 60%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o
[ 60%] Built target pcmodelformat
[ 60%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/pointcloudformat.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 61%] Linking CXX shared module ../../lib/pointcloudformat.so
[ 61%] Built target pointcloudformat
[ 61%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/posformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 61%] Linking CXX shared module ../../lib/posformat.so
[ 61%] Built target posformat
[ 61%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/pqrformat.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel/src/formats/pqrformat.cpp:515:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/ios:46,
from /usr/include/c++/16.1.1/bits/ostream.h:43,
from /usr/include/c++/16.1.1/ostream:42,
from /usr/include/c++/16.1.1/iostream:43,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:24,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/pqrformat.cpp:16:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/pqrformat.cpp:515:21:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel/src/formats/pqrformat.cpp:532:64: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/pqrformat.cpp:532:29:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX shared module ../../lib/pqrformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/rinchiformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 61%] Linking CXX shared module ../../lib/rinchiformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obfunctions.h:22,
from /build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)':
/build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:351:46: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/ios:46,
from /usr/include/c++/16.1.1/bits/ostream.h:43,
from /usr/include/c++/16.1.1/ostream:42,
from /usr/include/c++/16.1.1/iostream:43,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:24,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:24:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:351:15:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)':
/build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:369:54: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /build/openbabel/src/openbabel/src/formats/pdbqtformat.cpp:369:19:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 61%] Built target pqrformat
[ 62%] Linking CXX shared module ../../lib/pdbqtformat.so
[ 62%] Built target rinchiformat
[ 63%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o
[ 64%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o
[ 64%] Built target pdbqtformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/rsmiformat.cpp:20:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 64%] Linking CXX shared module ../../lib/rsmiformat.so
[ 64%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/rxnformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 64%] Built target rsmiformat
[ 64%] Linking CXX shared module ../../lib/rxnformat.so
[ 64%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/src/formats/shelxformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 64%] Linking CXX shared module ../../lib/shelxformat.so
[ 64%] Built target rxnformat
[ 64%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o
[ 64%] Built target shelxformat
[ 65%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o
In file included from /build/openbabel/src/openbabel/src/formats/stlformat.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 65%] Linking CXX shared module ../../lib/stlformat.so
[ 65%] Built target stlformat
[ 65%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/thermoformat.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 65%] Linking CXX shared module ../../lib/thermoformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/smileyformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/src/formats/smileyformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 65%] Linking CXX shared module ../../lib/smileyformat.so
[ 65%] Built target thermoformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/unichemformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 65%] Linking CXX shared module ../../lib/unichemformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/tinkerformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 66%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o
[ 67%] Linking CXX shared module ../../lib/tinkerformat.so
[ 67%] Built target smileyformat
[ 67%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o
[ 67%] Built target unichemformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/viewmolformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 67%] Built target tinkerformat
[ 67%] Linking CXX shared module ../../lib/viewmolformat.so
[ 67%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o
[ 68%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o
[ 68%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/xedformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 68%] Built target viewmolformat
[ 68%] Linking CXX shared module ../../lib/xedformat.so
[ 69%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/xyzformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 69%] Linking CXX shared module ../../lib/xyzformat.so
[ 69%] Built target xedformat
[ 69%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/yasaraformat.cpp:36:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/build/openbabel/src/openbabel/src/formats/yasaraformat.cpp:588:32: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
In file included from /usr/include/stdio.h:974,
from /usr/include/c++/16.1.1/cstdio:47,
from /usr/include/c++/16.1.1/ext/string_conversions.h:47,
from /usr/include/c++/16.1.1/bits/basic_string.h:4499,
from /usr/include/c++/16.1.1/string:58,
from /usr/include/c++/16.1.1/bits/locale_classes.h:43,
from /usr/include/c++/16.1.1/bits/ios_base.h:43,
from /usr/include/c++/16.1.1/ios:46,
from /usr/include/c++/16.1.1/bits/ostream.h:43,
from /usr/include/c++/16.1.1/ostream:42,
from /usr/include/c++/16.1.1/iostream:43,
from /build/openbabel/src/openbabel/include/openbabel/obconversion.h:24,
from /build/openbabel/src/openbabel/include/openbabel/obmolecformat.h:25,
from /build/openbabel/src/openbabel/src/formats/yasaraformat.cpp:34:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /build/openbabel/src/openbabel/src/formats/yasaraformat.cpp:588:15:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/yasaraformat.so
[ 69%] Built target xyzformat
[ 70%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o
[ 70%] Built target yasaraformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/wln-nextmove.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 70%] Linking CXX shared module ../../lib/wlnformat.so
[ 70%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o
[ 70%] Built target wlnformat
In file included from /build/openbabel/src/openbabel/include/openbabel/depict/depict.h:23,
from /build/openbabel/src/openbabel/src/formats/png2format.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 70%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o
[ 70%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/xml/cdxmlformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 71%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o
[ 71%] Linking CXX shared module ../../lib/cdxmlformat.so
[ 71%] Built target cdxmlformat
[ 71%] Linking CXX shared module ../../lib/png2format.so
[ 71%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o
[ 71%] Built target png2format
[ 72%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o
[ 72%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/xml/pubchem.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 72%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o
[ 72%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/xml/cmlreactformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 72%] Linking CXX shared module ../../lib/cmlreactformat.so
[ 72%] Built target cmlreactformat
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/src/formats/xml/cmlformat.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 72%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o
[ 72%] Building CXX object src/formats/CMakeFiles/chemicaljsonformat.dir/json/chemicaljsonformat.cpp.o
[ 72%] Linking CXX shared module ../../lib/pubchem.so
[ 72%] Linking CXX shared module ../../lib/xmlformat.so
[ 72%] Built target pubchem
[ 72%] Building CXX object src/formats/CMakeFiles/ketformat.dir/json/ketformat.cpp.o
[ 72%] Built target xmlformat
[ 73%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o
[ 73%] Linking CXX shared module ../../lib/cmlformat.so
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/json/chemdoodlejsonformat.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 73%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so
[ 73%] Built target cmlformat
[ 73%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o
[ 73%] Built target chemdoodlejsonformat
[ 74%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o
[ 74%] Linking CXX executable ../bin/obabel
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/tools/obconformer.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/rotor.h:23,
from /build/openbabel/src/openbabel/include/openbabel/rotamer.h:26,
from /build/openbabel/src/openbabel/tools/obconformer.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 74%] Linking CXX executable ../bin/obconformer
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/json/chemicaljsonformat.cpp:17:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 75%] Linking CXX shared module ../../lib/chemicaljsonformat.so
[ 75%] Built target obabel
[ 75%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o
[ 75%] Built target obconformer
[ 75%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o
[ 75%] Built target chemicaljsonformat
[ 75%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/tools/obenergy.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 76%] Linking CXX executable ../bin/obenergy
[ 76%] Built target obenergy
In file included from /build/openbabel/src/openbabel/tools/obfit.cpp:36:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/tools/obfit.cpp:38:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/tools/obfitall.cpp:36:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/tools/obfitall.cpp:37:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 76%] Linking CXX executable ../bin/obfit
[ 76%] Linking CXX executable ../bin/obfitall
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/json/pubchemjsonformat.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 76%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o
[ 76%] Linking CXX shared module ../../lib/pubchemjsonformat.so
[ 76%] Built target obfit
[ 76%] Built target obfitall
[ 76%] Built target pubchemjsonformat
[ 76%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o
[ 76%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o
[ 76%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/src/formats/json/ketformat.cpp:34:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 76%] Linking CXX shared module ../../lib/ketformat.so
[ 76%] Built target ketformat
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/tools/obgen.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 77%] Linking CXX executable ../bin/obgen
[ 77%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o
[ 77%] Built target obgen
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/tools/obminimize.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 77%] Linking CXX executable ../bin/obminimize
[ 77%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/tools/obmm.cpp:56:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/tools/obprobe.cpp:30:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 78%] Linking CXX executable ../bin/obprobe
[ 78%] Linking CXX executable ../bin/obmm
[ 78%] Built target obminimize
[ 78%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o
[ 78%] Built target obprobe
[ 78%] Built target obmm
[ 78%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o
[ 78%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/tools/obprop.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 78%] Linking CXX executable ../bin/obprop
[ 78%] Built target obprop
[ 78%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o
[ 78%] Linking CXX executable ../bin/obsym
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/tools/obrotate.cpp:39:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/tools/obrotate.cpp:40:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 79%] Linking CXX executable ../bin/obtautomer
[ 79%] Linking CXX executable ../bin/obrotate
In file included from /build/openbabel/src/openbabel/include/openbabel/rotor.h:23,
from /build/openbabel/src/openbabel/include/openbabel/rotamer.h:26,
from /build/openbabel/src/openbabel/tools/obrotamer.cpp:28:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/include/openbabel/rotamer.h:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 79%] Linking CXX executable ../bin/obrotamer
[ 79%] Built target obsym
[ 79%] Built target obtautomer
[ 79%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o
[ 79%] Built target obrotate
[ 79%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o
[ 79%] Linking CXX executable ../bin/obthermo
[ 80%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o
[ 80%] Built target obthermo
[ 80%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.cpp.o
In file included from /build/openbabel/src/openbabel/tools/obgrep.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 80%] Linking CXX executable ../bin/obgrep
[ 80%] Built target obgrep
[ 80%] Built target obrotamer
[ 80%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o
[ 80%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o
[ 80%] Linking CXX executable ../bin/obspectrophore
[ 81%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o
In file included from /build/openbabel/src/openbabel/tools/obrms.cpp:33:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/include/openbabel/query.h:27,
from /build/openbabel/src/openbabel/tools/obrms.cpp:35:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/tools/obdistgen.cpp:30:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 82%] Linking CXX executable ../bin/obrms
[ 82%] Linking CXX executable ../bin/obdistgen
[ 82%] Built target obspectrophore
[ 82%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o
[ 82%] Built target obdistgen
[ 82%] Built target obrms
[ 82%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o
[ 82%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o
[ 82%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o
[ 82%] Linking CXX executable ../bin/test_inchiwrite
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/roundtrip.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 83%] Linking CXX executable ../bin/roundtrip
[ 83%] Built target test_inchiwrite
[ 83%] Building CXX object test/CMakeFiles/test_runner.dir/distgeomtest.cpp.o
[ 83%] Built target roundtrip
[ 84%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/aligntest.cpp:2:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 84%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/fuzz_obconversion.cpp.o
[ 84%] Building CXX object test/CMakeFiles/fuzz_obconversion_smiles.dir/fuzz/standalone_main.cc.o
[ 84%] Linking CXX executable ../bin/fuzz_obconversion_smiles
[ 84%] Building CXX object test/CMakeFiles/test_runner.dir/gen3dtest.cpp.o
[ 84%] Built target fuzz_obconversion_smiles
[ 85%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/fuzz_obconversion.cpp.o
[ 85%] Building CXX object test/CMakeFiles/fuzz_obconversion_sdf.dir/fuzz/standalone_main.cc.o
[ 85%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o
[ 85%] Linking CXX executable ../bin/fuzz_obconversion_sdf
[ 85%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o
[ 85%] Built target fuzz_obconversion_sdf
/build/openbabel/src/openbabel/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::OnConvert(wxCommandEvent&)':
/build/openbabel/src/openbabel/src/GUI/OBGUI.cpp:589:9: warning: ignoring return value of 'std::__cxx11::basic_istringstream<_CharT, _Traits, _Alloc>::__string_type std::__cxx11::basic_istringstream<_CharT, _Traits, _Alloc>::str() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>; __string_type = std::__cxx11::basic_string<char>]', declared with attribute 'nodiscard' [-Wunused-result]
In file included from /build/openbabel/src/openbabel/include/openbabel/plugin.h:28,
from /build/openbabel/src/openbabel/src/GUI/OBGUI.cpp:23:
/usr/include/c++/16.1.1/sstream:796:7: note: declared here
[ 85%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/fuzz_convert.cpp.o
[ 85%] Building CXX object test/CMakeFiles/fuzz_molecule.dir/fuzz/fuzz_molecule.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/aliastest.cpp:18:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 85%] Linking CXX executable ../../bin/obgui
[ 86%] Building CXX object test/CMakeFiles/fuzz_smart.dir/fuzz/fuzz_smart.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/include/openbabel/query.h:27,
from /build/openbabel/src/openbabel/test/automorphismtest.cpp:3:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 86%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/test/fuzz/fuzz_molecule.cpp:5:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 86%] Building CXX object test/CMakeFiles/fuzz_convert.dir/fuzz/standalone_main.cc.o
[ 86%] Building CXX object test/CMakeFiles/fuzz_molecule.dir/fuzz/standalone_main.cc.o
[ 86%] Built target obgui
[ 86%] Linking CXX executable ../bin/fuzz_molecule
[ 86%] Linking CXX executable ../bin/fuzz_convert
[ 86%] Building CXX object test/CMakeFiles/fuzz_empty_write.dir/fuzz/fuzz_empty_write.cpp.o
In file included from /build/openbabel/src/openbabel/test/fuzz/fuzz_smart.cpp:3:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 86%] Building CXX object test/CMakeFiles/fuzz_smart.dir/fuzz/standalone_main.cc.o
[ 86%] Built target fuzz_molecule
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/buildertest.cpp:3:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 87%] Generating /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp, ../lib/python/openbabel/openbabel.py
[ 87%] Built target fuzz_convert
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o
[ 88%] Linking CXX executable ../bin/fuzz_smart
[ 88%] Built target fuzz_smart
[ 89%] Building CXX object test/CMakeFiles/fuzz_empty_write.dir/fuzz/standalone_main.cc.o
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/test/fuzz/fuzz_empty_write.cpp:15:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 89%] Linking CXX executable ../bin/fuzz_empty_write
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/test/canonfragmenttest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o
[ 89%] Built target fuzz_empty_write
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o
/build/openbabel/src/openbabel/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored)
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/test/carspacegrouptest.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/canonstabletest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/fuzzregresstest.cpp.o
/build/openbabel/src/openbabel/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored)
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/test/cifspacegrouptest.cpp:24:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o
/build/openbabel/src/openbabel/include/openbabel/spectrophore.h:569: Warning 312: Nested struct not currently supported (ignored).
/build/openbabel/src/openbabel/include/openbabel/spectrophore.h:576: Warning 312: Nested struct not currently supported (ignored).
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/cistranstest.cpp:9:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/phmodel.h:23,
from /build/openbabel/src/openbabel/test/conversiontest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/ketformattest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/graphsymtest.cpp:8:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/addhtest.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/include/openbabel/alias.h:20,
from /build/openbabel/src/openbabel/test/ketformattest.cpp:19:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/test/lssrtest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/lssrtest.cpp:5:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/include/openbabel/query.h:27,
from /build/openbabel/src/openbabel/test/isomorphismtest.cpp:6:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o
/build/openbabel/src/openbabel/include/openbabel/bitvec.h:59: Warning 560: Unknown Doxygen command: users.
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/periodictest.cpp:22:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/rotor.h:23,
from /build/openbabel/src/openbabel/test/rotortest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/bond.h:32,
from /build/openbabel/src/openbabel/test/rotortest.cpp:5:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/phmodel.h:23,
from /build/openbabel/src/openbabel/test/regressionstest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/regressionstest.cpp:6:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/test/shuffletest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/spectrophoretest.cpp:5:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/smilestest.cpp:11:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/stereotest.cpp:7:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/maereadertest.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/uniqueidtest.cpp:4:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/include/openbabel/math/transform3d.h:23,
from /build/openbabel/src/openbabel/include/openbabel/math/spacegroup.h:23,
from /build/openbabel/src/openbabel/include/openbabel/generic.h:29,
from /build/openbabel/src/openbabel/test/maereadertest.cpp:23:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/aromatest.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/atom.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/bond.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/test/charge_mmff94.cpp:14:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$a.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$c.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$S.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:628: Warning 560: Unknown Doxygen command: f$S.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:628: Warning 566: Unexpected iterator value in DoxygenParser::parse
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:649: Warning 562: Expected Doxygen command: f$.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:649: Warning 566: Unexpected iterator value in DoxygenParser::parse
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:649: Warning 561: Unexpected end of Doxygen comment encountered.
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$a.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$c.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:631: Warning 560: Unknown Doxygen command: f$S.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:660: Warning 562: Expected Doxygen command: f$.
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:660: Warning 566: Unexpected iterator value in DoxygenParser::parse
/build/openbabel/src/openbabel/include/openbabel/stereo/stereo.h:660: Warning 561: Unexpected end of Doxygen comment encountered.
In file included from /build/openbabel/src/openbabel/include/openbabel/chargemodel.h:25,
from /build/openbabel/src/openbabel/test/charge_gasteiger.cpp:14:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/test/ffgaff.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/test/ffghemical.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/test/ffuff.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/test/ffmmff94.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o
/build/openbabel/src/openbabel/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored,
/build/openbabel/src/openbabel/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &).
/build/openbabel/src/openbabel/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored,
/build/openbabel/src/openbabel/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &).
/build/openbabel/src/openbabel/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored,
/build/openbabel/src/openbabel/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &).
/build/openbabel/src/openbabel/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored,
/build/openbabel/src/openbabel/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &).
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/formalcharge.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 97%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o
In file included from /build/openbabel/src/openbabel/test/invalidsmarts.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/obiter.h:26,
from /build/openbabel/src/openbabel/test/iterators.cpp:31:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/groupcontrib.h:26,
from /build/openbabel/src/openbabel/test/logp_psa.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/mol.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o
/build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:48648:117: warning: trigraph ‘??)’ ignored, use ‘-trigraphs’ to enable [-Wtrigraphs]
48648 | { "OBBond_SetWedgeOrHash", _wrap_OBBond_SetWedgeOrHash, METH_VARARGS, "Set the WedgeOrHash flag on a bond (??)"},
/build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:56366:117: warning: trigraph ‘??)’ ignored, use ‘-trigraphs’ to enable [-Wtrigraphs]
56366 | { "OBBond_SetWedgeOrHash", _wrap_OBBond_SetWedgeOrHash, METH_VARARGS, "Set the WedgeOrHash flag on a bond (??)"},
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/pdbreadfile.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/include/openbabel/forcefield.h:27,
from /build/openbabel/src/openbabel/test/phmodel.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/phmodel.h:23,
from /build/openbabel/src/openbabel/test/phmodel.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/test/math.cpp:27:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[100%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/residue.cpp:26:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[100%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o
In file included from /build/openbabel/src/openbabel/include/openbabel/atom.h:35,
from /build/openbabel/src/openbabel/test/ringtest.cpp:30:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/typer.h:29,
from /build/openbabel/src/openbabel/include/openbabel/ring.h:30,
from /build/openbabel/src/openbabel/test/ringtest.cpp:32:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[100%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o
In file included from /build/openbabel/src/openbabel/test/smartsparse.cpp:29:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[100%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o
In file included from /build/openbabel/src/openbabel/test/smartstest.cpp:32:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
[100%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o
In file included from /build/openbabel/src/openbabel/test/smilesmatch.cpp:32:
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern()':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:183:88: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h: In copy constructor 'OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)':
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:186:112: warning: 'OpenBabel::OBSmartsPattern::_growbond' is deprecated [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/parsmart.h:158:38: note: declared here
In file included from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:26,
from /build/openbabel/src/openbabel/test/unitcell.cpp:25:
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h: In member function 'bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const':
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:281:29: warning: 'bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations]
/build/openbabel/src/openbabel/include/openbabel/math/vector3.h:274:10: note: declared here
[100%] Linking CXX executable ../bin/test_runner
[100%] Built target test_runner
In file included from /usr/include/c++/16.1.1/vector:74,
from /build/openbabel/src/openbabel/include/openbabel/oberror.h:28,
from /build/openbabel/src/openbabel/include/openbabel/math/matrix3x3.h:27,
from /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:3887:
/usr/include/c++/16.1.1/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/16.1.1/vector:68:
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5306:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5316:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5306:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5316:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; <template-parameter-2-2> = void; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5306:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; <template-parameter-2-2> = void; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5316:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; <template-parameter-2-2> = void; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5306:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; <template-parameter-2-2> = void; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5316:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; <template-parameter-2-2> = void; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5306:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; <template-parameter-2-2> = void; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5316:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; <template-parameter-2-2> = void; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5306:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; <template-parameter-2-2> = void; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]',
inlined from 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5316:23:
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/stl_vector.h:1611:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/16.1.1/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {OpenBabel::OBMol}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/16.1.1/bits/vector.tcc:458:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]' at /usr/include/c++/16.1.1/bits/stl_vector.h:1519:30,
inlined from 'static void swig::IteratorProtocol<Seq, T>::assign(PyObject*, Seq*) [with Seq = std::vector<OpenBabel::OBMol>; T = OpenBabel::OBMol]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5400:22,
inlined from 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, sequence**) [with Seq = std::vector<OpenBabel::OBMol>; T = OpenBabel::OBMol]' at /build/openbabel/src/openbabel/scripts/python/openbabel/openbabel-python.cpp:5445:45:
/usr/include/c++/16.1.1/bits/vector.tcc:383:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
[100%] Linking CXX shared module ../lib/python/openbabel/_openbabel.so
[100%] Built target bindings_python
==> Entering fakeroot environment...
==> Starting package_openbabel()...
-- Install configuration: "Release"
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-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obchiral.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obconformer.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obdistgen.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obenergy.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obfit.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obgen.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obgrep.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obgui.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obminimize.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obprobe.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obprop.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obrms.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obrotamer.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obrotate.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obspectrophore.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obsym.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obtautomer.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/obthermo.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/man/man1/roundtrip.1
-- Installing: /build/openbabel/pkg/openbabel/usr/share/openbabel/3.2.1/splash.png
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/libopenbabel.so.8.0.0
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/libopenbabel.so.8
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/libopenbabel.so.8.0.0" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/libopenbabel.so
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_descriptors.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_descriptors.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_fingerprints.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_fingerprints.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_forcefields.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_forcefields.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_ops.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_ops.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_charges.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/plugin_charges.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/smilesformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/smilesformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mdlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mdlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mol2format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mol2format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pdbformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pdbformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/inchiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/inchiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/asciiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/asciiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/copyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/copyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/MNAformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/MNAformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/molreport.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/molreport.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/nulformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/nulformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/painterformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/painterformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/povrayformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/povrayformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/reportformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/reportformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/svgformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/svgformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/textformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/textformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/titleformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/titleformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/confabreport.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/confabreport.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pngformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pngformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/acesformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/acesformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/abinitformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/abinitformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/adfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/adfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/aoforceformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/aoforceformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/castepformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/castepformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/crystal09format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/crystal09format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/daltonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/daltonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/dmolformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/dmolformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fchkformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fchkformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fhiaimsformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fhiaimsformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gamessformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gamessformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gaussformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gaussformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gausscubeformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gausscubeformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gausszmatformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gausszmatformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gulpformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gulpformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/hinformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/hinformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/jaguarformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/jaguarformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/molproformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/molproformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mopacformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mopacformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/nwchemformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/nwchemformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pwscfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pwscfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/qchemformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/qchemformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/siestaformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/siestaformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/turbomoleformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/turbomoleformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/vaspformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/vaspformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xsfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xsfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/zindoformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/zindoformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/maeformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/maeformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gamessukformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gamessukformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/orcaformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/orcaformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/APIInterface.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/APIInterface.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/CSRformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/CSRformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/PQSformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/PQSformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/MCDLformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/MCDLformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/alchemyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/alchemyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/acrformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/acrformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/amberformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/amberformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/balstformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/balstformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/bgfformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/bgfformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/boxformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/boxformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cacaoformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cacaoformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cacheformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cacheformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/carformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/carformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cccformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cccformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chem3dformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chem3dformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemdrawcdx.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemdrawcdx.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemdrawct.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemdrawct.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemkinformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemkinformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemtoolformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemtoolformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cifformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cifformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cofformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cofformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/crkformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/crkformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cssrformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cssrformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/dlpolyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/dlpolyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/exyzformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/exyzformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fastsearchformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fastsearchformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fastaformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fastaformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/featformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/featformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fhformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fhformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fingerprintformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fingerprintformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fpsformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/fpsformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/freefracformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/freefracformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/ghemicalformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/ghemicalformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gromos96format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/gromos96format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/groformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/groformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/lmpdatformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/lmpdatformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/lpmdformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/lpmdformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mdffformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mdffformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mmcifformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mmcifformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mmodformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mmodformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/moldenformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/moldenformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mpdformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mpdformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mpqcformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/mpqcformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/msiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/msiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/msmsformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/msmsformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/opendxformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/opendxformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/outformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/outformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pcmodelformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pcmodelformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pdbqtformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pdbqtformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pointcloudformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pointcloudformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/posformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/posformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pqrformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pqrformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/rinchiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/rinchiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/rsmiformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/rsmiformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/rxnformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/rxnformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/shelxformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/shelxformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/smileyformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/smileyformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/stlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/stlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/thermoformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/thermoformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/tinkerformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/tinkerformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/unichemformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/unichemformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/viewmolformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/viewmolformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/wlnformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/wlnformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xedformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xedformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xyzformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xyzformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/yasaraformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/yasaraformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/png2format.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/png2format.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cdxmlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cdxmlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cmlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cmlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cmlreactformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/cmlreactformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pubchem.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pubchem.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xmlformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/xmlformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemdoodlejsonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemdoodlejsonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemicaljsonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/chemicaljsonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/ketformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/ketformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pubchemjsonformat.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/lib/openbabel/3.2.1/pubchemjsonformat.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obabel
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obabel" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obconformer
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obconformer" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obenergy
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obenergy" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obfit
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obfit" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obfitall
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obfitall" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obgen
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obgen" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obminimize
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obminimize" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obmm
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obmm" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obprobe
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obprobe" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obprop
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obprop" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obrotamer
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obrotamer" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obrotate
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obrotate" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obsym
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obsym" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obtautomer
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obtautomer" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obthermo
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obthermo" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obdistgen
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obdistgen" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obgrep
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obgrep" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obspectrophore
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obspectrophore" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obrms
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obrms" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/obgui
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/obgui" to "/usr/lib"
-- Installing: /build/openbabel/pkg/openbabel/usr/bin/roundtrip
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/openbabel/usr/bin/roundtrip" to "/usr/lib"
==> Tidying install...
-> Removing libtool files...
-> Removing static library files...
-> Purging unwanted files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> WARNING: Package contains reference to $srcdir
usr/bin/obgui
==> Creating package "openbabel"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Starting package_python-openbabel()...
-- Install configuration: "Release"
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.14/site-packages/openbabel/_openbabel.so
-- Set non-toolchain portion of runtime path of "/build/openbabel/pkg/python-openbabel/usr/lib/python3.14/site-packages/openbabel/_openbabel.so" to "/usr/lib"
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.14/site-packages/openbabel/__init__.py
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.14/site-packages/openbabel/openbabel.py
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.14/site-packages/openbabel/pybel.py
-- Installing: /build/openbabel/pkg/python-openbabel/usr/lib/python3.14/site-packages/openbabel/executable.py
==> Tidying install...
-> Removing libtool files...
-> Removing static library files...
-> Purging unwanted files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> Creating package "python-openbabel"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: openbabel 3.2.1-1 (Tue Jul 14 16:11:52 2026)
==> Cleaning up...
[?12l[?25h