==> Synchronizing chroot copy [/home/leming/armv7/root] -> [leming]...done
==> Making package: pymol 3.0.0-10 (Thu May 1 06:11:31 2025)
==> Retrieving sources...
-> Found pymol-open-source-3.0.0.tar.gz
-> Found pymol.png
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
pymol-open-source-3.0.0.tar.gz ... Passed
pymol.png ... Passed
==> Making package: pymol 3.0.0-10 (Thu May 1 06:11:52 2025)
==> Checking runtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
warning: dependency cycle detected:
warning: harfbuzz will be installed before its freetype2 dependency
warning: dependency cycle detected:
warning: mesa will be installed before its libglvnd dependency
Packages (76) avahi-1:0.8+r194+g3f79789-3 blas-3.12.1-2 blosc-1.21.6-1
cblas-3.12.1-2 default-cursors-3-1 double-conversion-3.3.1-1
duktape-2.7.0-7 fontconfig-2:2.16.2-1 glu-9.0.3-2
graphite-1:1.3.14-4 harfbuzz-11.2.0-1 hdf5-1.14.6-4
lapack-3.12.1-2 libaec-1.1.3-2 libcups-2:2.4.12-1
libdaemon-0.14-6 libdrm-2.4.124-1 libedit-20250104_3.1-1
libevdev-1.13.4-1 libglvnd-1.7.0-1 libgudev-238-1
libice-1.1.2-1 libinput-1.28.1-1 libjpeg-turbo-3.1.0-1
libpciaccess-0.18.1-2 libpng-1.6.47-1 libproxy-0.5.9-1
libsm-1.2.6-1 libwacom-2.15.0-1 libx11-1.8.12-1
libxau-1.0.12-1 libxcb-1.17.0-1 libxdmcp-1.1.5-1.1
libxext-1.3.6-1 libxfixes-6.0.1-2 libxi-1.8.2-1
libxkbcommon-1.8.1-1 libxkbcommon-x11-1.8.1-1 libxmu-1.2.1-1
libxrender-0.9.12-1 libxshmfence-1.3.3-1 libxt-1.3.1-1
libxxf86vm-1.1.6-1 libzip-1.11.3-1 llvm-libs-19.1.7-2
lm_sensors-1:3.6.0.r41.g31d1f125-3 md4c-0.5.2-1 mesa-1:25.0.4-1
mtdev-1.1.7-1 python-pyqt5-sip-12.17.0-1
qt5-base-5.15.16+kde+r131-1 qt5-translations-5.15.16-3
shared-mime-info-2.4-2 snappy-1.2.2-2 spirv-tools-1:1.4.309.0-1
tslib-1.23-1 wayland-1.23.1-1 xcb-proto-1.17.0-3
xcb-util-0.4.1-2 xcb-util-image-0.4.1-3
xcb-util-keysyms-0.4.1-5 xcb-util-renderutil-0.3.10-2
xcb-util-wm-0.4.2-2 xdg-utils-1.2.1-1 xkeyboard-config-2.44-1
xorg-xprop-1.2.8-1 xorg-xset-1.2.5-2 xorgproto-2024.1-2
freetype2-2.13.3-3 glew-2.2.0-7 glm-1.0.1-1 netcdf-4.9.3-3
netcdf-cxx-4.3.1-5 python-numpy-2.2.5-1 python-pyqt5-5.15.11-2
tcsh-6.24.15-1
Total Download Size: 21.85 MiB
Total Installed Size: 453.28 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
python-numpy-2.2.5-1-armv7h downloading...
lapack-3.12.1-2-armv7h downloading...
hdf5-1.14.6-4-armv7h downloading...
glm-1.0.1-1-armv7h downloading...
python-pyqt5-5.15.11-2-armv7h downloading...
netcdf-4.9.3-3-armv7h downloading...
glew-2.2.0-7-armv7h downloading...
tcsh-6.24.15-1-armv7h downloading...
libzip-1.11.3-1-armv7h downloading...
blas-3.12.1-2-armv7h downloading...
netcdf-cxx-4.3.1-5-armv7h downloading...
cblas-3.12.1-2-armv7h downloading...
python-pyqt5-sip-12.17.0-1-armv7h downloading...
blosc-1.21.6-1-armv7h downloading...
libaec-1.1.3-2-armv7h downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing libpng...
installing graphite...
Optional dependencies for graphite
graphite-docs: Documentation
installing harfbuzz...
Optional dependencies for harfbuzz
harfbuzz-utils: utilities
installing freetype2...
installing xcb-proto...
installing xorgproto...
installing libxdmcp...
installing libxau...
installing libxcb...
installing libx11...
installing libxext...
installing libpciaccess...
installing libdrm...
Optional dependencies for libdrm
cairo: needed for modetest tool
installing libxshmfence...
installing libxxf86vm...
installing libedit...
installing llvm-libs...
installing lm_sensors...
Optional dependencies for lm_sensors
rrdtool: for logging with sensord
perl: for sensor detection and configuration convert [installed]
installing spirv-tools...
installing default-cursors...
Optional dependencies for default-cursors
adwaita-cursors: default cursor theme
installing wayland...
installing mesa...
Optional dependencies for mesa
opengl-man-pages: for the OpenGL API man pages
installing libglvnd...
installing glu...
installing glew...
Optional dependencies for glew
libx11: for glxewinfo and visualinfo [installed]
installing glm...
installing python-pyqt5-sip...
installing libjpeg-turbo...
installing xcb-util-keysyms...
installing xcb-util-renderutil...
installing fontconfig...
Creating fontconfig configuration...
Rebuilding fontconfig cache...
installing libice...
installing libsm...
installing libxt...
installing libxmu...
installing xorg-xset...
installing xorg-xprop...
installing xdg-utils...
Optional dependencies for xdg-utils
kde-cli-tools: for KDE Plasma5 support in xdg-open
exo: for Xfce support in xdg-open
pcmanfm: for LXDE support in xdg-open
perl-file-mimeinfo: for generic support in xdg-open
perl-net-dbus: Perl extension to dbus used in xdg-screensaver
perl-x11-protocol: Perl X11 protocol used in xdg-screensaver
installing shared-mime-info...
installing xcb-util-wm...
installing libxrender...
installing libxfixes...
installing libxi...
installing xcb-util...
installing xcb-util-image...
installing tslib...
installing mtdev...
installing libevdev...
installing libgudev...
installing libwacom...
Optional dependencies for libwacom
python-libevdev: for libwacom-show-stylus
python-pyudev: for libwacom-show-stylus
installing libinput...
Optional dependencies for libinput
gtk4: libinput debug-gui
python-pyudev: libinput measure
python-libevdev: libinput measure
python-yaml: used by various tools
installing xkeyboard-config...
installing libxkbcommon...
Optional dependencies for libxkbcommon
libxkbcommon-x11: xkbcli interactive-x11 [pending]
wayland: xkbcli interactive-wayland [installed]
installing libxkbcommon-x11...
installing duktape...
installing libproxy...
installing libdaemon...
installing avahi...
Optional dependencies for avahi
gtk3: avahi-discover, avahi-discover-standalone, bshell, bssh, bvnc
libevent: libevent bindings [installed]
nss-mdns: NSS support for mDNS
python-dbus: avahi-bookmarks, avahi-discover
python-gobject: avahi-bookmarks, avahi-discover
python-twisted: avahi-bookmarks
qt5-base: qt5 bindings [pending]
installing libcups...
installing double-conversion...
installing md4c...
installing qt5-translations...
installing qt5-base...
Optional dependencies for qt5-base
qt5-svg: to use SVG icon themes
qt5-wayland: to run Qt applications in a Wayland session
postgresql-libs: PostgreSQL driver
mariadb-libs: MariaDB driver
unixodbc: ODBC driver
libfbclient: Firebird/iBase driver
freetds: MS SQL driver
gtk3: GTK platform plugin
perl: for fixqt4headers and syncqt [installed]
installing python-pyqt5...
Optional dependencies for python-pyqt5
python-opengl: enable OpenGL 3D graphics in PyQt applications
python-dbus: for python-dbus mainloop support
qt5-multimedia: QtMultimedia, QtMultimediaWidgets
qt5-tools: QtHelp, QtDesigner
qt5-svg: QtSvg
qt5-xmlpatterns: QtXmlPatterns
qt5-declarative: QtQml, qmlplugin
qt5-serialport: QtSerialPort
qt5-websockets: QtWebSockets
qt5-connectivity: QtNfc, QtBluetooth
qt5-x11extras: QtX11Extras
qt5-remoteobjects: QtRemoteObjects
qt5-speech: QtTextToSpeech
qt5-quick3d: QtQuick3D
qt5-location: QtLocation, QtPositioning
qt5-sensors: QtSensors
qt5-webchannel: QtWebChannel
installing libaec...
installing hdf5...
installing snappy...
installing blosc...
installing libzip...
installing netcdf...
Optional dependencies for netcdf
netcdf-fortran: fortran bindings
netcdf-cxx: c++ bindings [pending]
installing netcdf-cxx...
installing blas...
installing cblas...
installing lapack...
installing python-numpy...
Optional dependencies for python-numpy
blas-openblas: faster linear algebra
installing tcsh...
:: Running post-transaction hooks...
(1/9) Creating system user accounts...
Creating group 'avahi' with GID 971.
Creating user 'avahi' (Avahi mDNS/DNS-SD daemon) with UID 971 and GID 971.
(2/9) Reloading system manager configuration...
Skipped: Current root is not booted.
(3/9) Updating udev hardware database...
(4/9) Reloading device manager configuration...
Skipped: Device manager is not running.
(5/9) Arming ConditionNeedsUpdate...
(6/9) Updating the MIME type database...
(7/9) Updating fontconfig configuration...
(8/9) Reloading system bus configuration...
Skipped: Current root is not booted.
(9/9) Updating fontconfig cache...
[?25h==> Checking buildtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
Packages (20) boost-1.87.0-3 boost-libs-1.87.0-3 msgpack-cxx-7.0.0-1
python-autocommand-2.2.2-7 python-jaraco.collections-5.1.0-1
python-jaraco.context-6.0.1-1 python-jaraco.functools-4.1.0-1
python-jaraco.text-4.0.0-2 python-more-itertools-10.6.0-1
python-packaging-25.0-1 python-platformdirs-4.3.6-2
python-pyproject-hooks-1.2.0-3 desktop-file-utils-0.28-1
gendesk-1.0.10-1 mmtf-cpp-1.1.0-2 msgpack-c-6.1.0-2
python-build-1.2.2-3 python-installer-0.7.0-10
python-setuptools-1:79.0.1-1 python-wheel-0.45.1-1
Total Download Size: 2.17 MiB
Total Installed Size: 207.42 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
gendesk-1.0.10-1-armv7h downloading...
msgpack-cxx-7.0.0-1-any downloading...
msgpack-c-6.1.0-2-armv7h downloading...
mmtf-cpp-1.1.0-2-any downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing desktop-file-utils...
installing gendesk...
installing boost-libs...
Optional dependencies for boost-libs
openmpi: for mpi support
installing boost...
Optional dependencies for boost
python: for python bindings [installed]
installing msgpack-cxx...
installing mmtf-cpp...
installing msgpack-c...
installing python-packaging...
installing python-pyproject-hooks...
installing python-build...
Optional dependencies for python-build
python-pip: to use as the Python package installer (default)
python-uv: to use as the Python package installer
python-virtualenv: to use virtualenv for build isolation
installing python-installer...
installing python-wheel...
Optional dependencies for python-wheel
python-keyring: for wheel.signatures
python-xdg: for wheel.signatures
python-setuptools: for legacy bdist_wheel subcommand [pending]
installing python-more-itertools...
installing python-jaraco.functools...
installing python-jaraco.context...
installing python-autocommand...
installing python-jaraco.text...
Optional dependencies for python-jaraco.text
python-inflect: for show-newlines script
installing python-jaraco.collections...
installing python-platformdirs...
installing python-setuptools...
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
[?25h==> Retrieving sources...
-> Found pymol-open-source-3.0.0.tar.gz
-> Found pymol.png
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Extracting pymol-open-source-3.0.0.tar.gz with bsdtar
==> Starting prepare()...
==> Starting build()...
[pymol] Generating desktop file... Chemistry is an unrecognized category
ok
* Getting build dependencies for wheel...
/usr/lib/python3.13/site-packages/setuptools/command/sdist.py:122: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`.
!!
********************************************************************************
Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
See https://peps.python.org/pep-0632/ for details.
********************************************************************************
!!
self._add_data_files(self._safe_data_files(build_py))
* Building wheel...
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc'
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from /usr/include/c++/14.2.1/map:62,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/14.2.1/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/14.2.1/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483646]
In file included from /usr/include/stdio.h:970,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483646]
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'std::string DDreldir(const std::string&, int, int)',
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
In function 'int sprintf(char*, const char*, ...)',
inlined from 'std::string DDreldir(const std::string&, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'std::string DDreldir(const std::string&, int, int)',
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646]
In function 'int sprintf(char*, const char*, ...)',
inlined from 'std::string DDreldir(const std::string&, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/mmtf-c/mmtf_parser.cpp: In function 'bool MMTF_unpack_from_file(const char*, MMTF_container*)':
contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data':
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata':
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data':
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata':
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:34: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:33: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:31: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read':
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
In function 'vtf_error',
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from 'vtf_read_bonds' at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:20: warning: '%s' directive argument is null [-Wformat-overflow=]
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
In function 'read_car_structure_line',
inlined from 'read_car_structure' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
In file included from /usr/include/stdio.h:970,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function 'sprintf',
inlined from 'read_car_structure_line' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
inlined from 'read_car_structure' at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()':
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
layer0/Texture.cpp: In function 'bool TextureIsCharTextured(PyMOLGlobals*, int, float*)':
layer0/Texture.cpp:130:9: warning: unused variable 'use_shader' [-Wunused-variable]
In file included from /usr/include/c++/14.2.1/bits/stl_algobase.h:64,
from /usr/include/c++/14.2.1/bits/specfun.h:43,
from /usr/include/c++/14.2.1/cmath:3906,
from /usr/include/c++/14.2.1/math.h:36,
from layer0/os_std.h:24,
from layer1/Scene.cpp:18:
/usr/include/c++/14.2.1/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
layer1/Scene.cpp:1485:24: required from here
/usr/include/c++/14.2.1/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)':
layer1/SceneMouse.cpp:453:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)' at layer1/SceneMouse.cpp:452:119:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)':
layer1/Ray.cpp:1531:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
......
layer1/Ray.cpp:1530:18: note: 'sprintf' output between 116 and 2993 bytes into a destination of size 1024
layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()':
layer2/ObjectSlice.cpp:639:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
layer2/ObjectSlice.cpp:638:120: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255
layer2/ObjectSlice.cpp:650:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
layer2/ObjectSlice.cpp:649:122: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)':
layer2/ObjectSurface.cpp:269:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
layer2/ObjectSurface.cpp:268:118: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255
layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()':
layer2/ObjectSurface.cpp:494:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
layer2/ObjectSurface.cpp:493:124: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)':
layer2/ObjectVolume.cpp:80:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)' at layer2/ObjectVolume.cpp:79:113:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const':
layer1/SymOp.cpp:37:26: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'std::string pymol::SymOp::to_string() const' at layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)':
layer2/ObjectMap.cpp:5983:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void ObjectMapDump(const ObjectMap*, const char*, int, int)' at layer2/ObjectMap.cpp:5982:117:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4291:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4290:114:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4291:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4290:114:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
layer2/ObjectMap.cpp:2962:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2961:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
layer2/ObjectMap.cpp:2971:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2970:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
layer2/ObjectMap.cpp:2977:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:2976:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
layer2/ObjectMap.cpp:3059:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:3058:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()':
layer2/ObjectMesh.cpp:503:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
layer2/ObjectMesh.cpp:502:120: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255
layer2/ObjectMesh.cpp:536:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
layer2/ObjectMesh.cpp:535:121: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255
layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)':
layer2/ObjectMesh.cpp:330:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
layer2/ObjectMesh.cpp:329:118: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255
layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
layer2/ObjectMolecule.cpp:7603:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
layer2/ObjectMolecule.cpp:7602:111: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255
layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()':
layer2/ObjectMolecule.cpp:10629:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
layer2/ObjectMolecule.cpp:10628:121: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255
layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)':
layer2/ObjectMolecule.cpp:10755:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
layer2/ObjectMolecule.cpp:10755:21: note: directive argument in the range [-2147483647, 2147483647]
layer2/ObjectMolecule.cpp:10755:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024
layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)':
layer2/ObjectMolecule2.cpp:335:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)' at layer2/ObjectMolecule2.cpp:334:115:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)':
layer3/PlugIOManager.cpp:941:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:21:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)' at layer3/PlugIOManager.cpp:940:115:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)':
layer3/Editor.cpp:1935:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
layer3/Editor.cpp:1934:115: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255
layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)':
layer3/Editor.cpp:337:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
layer3/Editor.cpp:337:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256
layer3/Editor.cpp:339:21: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
layer3/Editor.cpp:339:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256
layer3/Editor.cpp:341:21: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
layer3/Editor.cpp:341:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256
In file included from layer1/Setting.h:27,
from layer1/PyMOLObject.h:25,
from layer3/Executive.h:25,
from layer3/Executive.cpp:37:
layer0/Result.h: In constructor 'pymol::Result<ResultT>::Result(type) [with ResultT = std::pair<float, float>]':
layer0/Result.h:99:3: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11440:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:11440:17: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11439:52: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255
layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
layer3/Executive.cpp:11521:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:11521:8: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11520:43: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255
layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11621:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
layer3/Executive.cpp:11620:54: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255
layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:11700:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:11700:15: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11699:50: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255
layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)':
layer3/Executive.cpp:12242:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12242:19: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12241:54: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
layer3/Executive.cpp:12234:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12233:54: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
layer3/Executive.cpp:12213:63: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12213:48: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12145:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12144:60: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255
layer3/Executive.cpp:12113:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12113:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12113:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12112:56: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255
layer3/Executive.cpp:12110:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12110:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12109:56: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255
layer3/Executive.cpp:12177:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12177:25: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12176:60: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
layer3/Executive.cpp:12169:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12168:60: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
layer3/Executive.cpp:12073:63: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
layer3/Executive.cpp:12073:48: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:9017:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
layer3/Executive.cpp:9016:123: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255
layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)':
layer3/Executive.cpp:5952:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
layer3/Executive.cpp:5951:115: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
layer3/Executive.cpp:5961:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
layer3/Executive.cpp:5960:115: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255
layer3/Executive.cpp:5952:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
layer3/Executive.cpp:5951:115: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)':
layer3/Executive.cpp:9381:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
layer3/Executive.cpp:9380:125: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255
layer3/Executive.cpp:9393:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
layer3/Executive.cpp:9392:125: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255
layer3/Executive.cpp:9368:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
layer3/Executive.cpp:9367:125: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:11893:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
layer3/Executive.cpp:11892:62: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
layer3/Executive.cpp:11804:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
layer3/Executive.cpp:11804:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11804:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11803:56: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255
layer3/Executive.cpp:11801:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
layer3/Executive.cpp:11801:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11800:56: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255
layer3/Executive.cpp:11925:25: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
layer3/Executive.cpp:11925:25: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:11924:60: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255
layer3/Executive.cpp:11918:25: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
layer3/Executive.cpp:11917:60: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255
layer3/Executive.cpp:11760:63: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
layer3/Executive.cpp:11760:48: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)':
layer3/Executive.cpp:12354:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
layer3/Executive.cpp:12353:58: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255
layer3/Executive.cpp:12376:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
layer3/Executive.cpp:12376:25: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12375:60: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255
layer3/Executive.cpp:12370:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
layer3/Executive.cpp:12369:60: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255
layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
layer3/Executive.cpp:15489:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
layer3/Executive.cpp:15489:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024
layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)':
layer3/Executive.cpp:14465:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
layer3/Executive.cpp:14464:115: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255
layer3/Executive.cpp:14460:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
layer3/Executive.cpp:14459:115: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255
layer3/Executive.cpp:14491:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
cc1plus: note: destination object is likely at address zero
layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)':
layer3/Executive.cpp:9681:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
layer3/Executive.cpp:9680:111: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)':
layer3/Executive.cpp:2266:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
layer3/Executive.cpp:2265:125: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255
layer3/Executive.cpp: In function 'pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)':
layer3/Executive.cpp:3523:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
layer3/Executive.cpp:3522:113: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255
In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)',
inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at layer3/Executive.cpp:5706:38:
layer3/Executive.cpp:5076:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
layer3/Executive.cpp:5075:119: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255
layer3/Executive.cpp:5101:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
layer3/Executive.cpp:5100:117: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:1717:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from layer3/Selector.cpp:20:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)' at layer3/Selector.cpp:1716:127:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/usr/lib/python3.13/site-packages/setuptools/command/sdist.py:122: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`.
!!
********************************************************************************
Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
See https://peps.python.org/pep-0632/ for details.
********************************************************************************
!!
self._add_data_files(self._safe_data_files(build_py))
copying data -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path/data
copying test -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path/test
copying examples -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path/examples
Successfully built pymol-3.0.0-cp313-cp313-linux_armv7l.whl
==> Entering fakeroot environment...
==> Starting package()...
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:147: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:151: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:147: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:151: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/webgui02.py:156: SyntaxWarning: invalid escape sequence '\='
/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/webgui02.py:156: SyntaxWarning: invalid escape sequence '\='
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
libfakeroot internal error: payload not recognized!
==> Creating package "pymol"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Adding changelog file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: pymol 3.0.0-10 (Thu May 1 06:16:44 2025)
==> Cleaning up...