==> Synchronizing chroot copy [/home/leming/armv7/root] -> [leming]...done
==> Making package: pymol 3.1.0-1 (Mon Sep 29 12:33:15 2025)
==> Retrieving sources...
-> Found pymol-open-source-3.1.0.tar.gz
-> Found pymol.svg
==> WARNING: Skipping verification of source file PGP signatures.
==> Validating source files with sha256sums...
pymol-open-source-3.1.0.tar.gz ... Passed
pymol.svg ... Passed
==> Making package: pymol 3.1.0-1 (Mon Sep 29 12:33:36 2025)
==> Checking runtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
warning: dependency cycle detected:
warning: mesa will be installed before its libglvnd dependency
Packages (76) avahi-1:0.9rc2-1 blas-3.12.1-2 blosc-1.21.6-1 cblas-3.12.1-2
default-cursors-3-1 double-conversion-3.3.1-1 duktape-2.7.0-7
fontconfig-2:2.17.1-1 glu-9.0.3-2 graphite-1:1.3.14-5
harfbuzz-11.5.1-1 hdf5-1.14.6-5 lapack-3.12.1-2 libaec-1.1.4-2
libcups-2:2.4.14-1 libdaemon-0.14-6 libdrm-2.4.125-1
libedit-20250104_3.1-1 libevdev-1.13.4-1 libglvnd-1.7.0-3
libgudev-238-3 libice-1.1.2-1 libinput-1.29.1-1
libjpeg-turbo-3.1.2-1 libpciaccess-0.18.1-2 libpng-1.6.50-1
libproxy-0.5.11-1 libsm-1.2.6-1 libwacom-2.16.1-1
libx11-1.8.12-1 libxau-1.0.12-1 libxcb-1.17.0-1
libxdmcp-1.1.5-1.1 libxext-1.3.6-1 libxfixes-6.0.2-1
libxi-1.8.2-1 libxkbcommon-1.11.0-1 libxkbcommon-x11-1.11.0-1
libxmu-1.2.1-1 libxrender-0.9.12-1 libxshmfence-1.3.3-1
libxt-1.3.1-1 libxxf86vm-1.1.6-1 libzip-1.11.4-1
llvm-libs-20.1.8-1 lm_sensors-1:3.6.2-1 md4c-0.5.2-1
mesa-1:25.2.3-2 mtdev-1.1.7-1 python-pyqt5-sip-12.17.0-1
qt5-base-5.15.17+kde+r123-2 qt5-translations-5.15.17-1
shared-mime-info-2.4-2 snappy-1.2.2-2 spirv-tools-1:1.4.321.0-1
tslib-1.23-1 wayland-1.24.0-1 xcb-proto-1.17.0-3
xcb-util-0.4.1-2 xcb-util-image-0.4.1-3
xcb-util-keysyms-0.4.1-5 xcb-util-renderutil-0.3.10-2
xcb-util-wm-0.4.2-2 xdg-utils-1.2.1-1 xkeyboard-config-2.45-1
xorg-xprop-1.2.8-1 xorg-xset-1.2.5-2 xorgproto-2024.1-2
freetype2-2.14.1-1 glew-2.2.0-7 glm-1.0.1-1 netcdf-4.9.3-3
netcdf-cxx-4.3.1-5 python-numpy-2.3.3-1 python-pyqt5-5.15.11-2
tcsh-6.24.16-1
Total Download Size: 22.21 MiB
Total Installed Size: 439.79 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
python-numpy-2.3.3-1-armv7h downloading...
lapack-3.12.1-2-armv7h downloading...
hdf5-1.14.6-5-armv7h downloading...
glm-1.0.1-1-armv7h downloading...
python-pyqt5-5.15.11-2-armv7h downloading...
netcdf-4.9.3-3-armv7h downloading...
glew-2.2.0-7-armv7h downloading...
tcsh-6.24.16-1-armv7h downloading...
libzip-1.11.4-1-armv7h downloading...
blas-3.12.1-2-armv7h downloading...
glu-9.0.3-2-armv7h downloading...
netcdf-cxx-4.3.1-5-armv7h downloading...
cblas-3.12.1-2-armv7h downloading...
python-pyqt5-sip-12.17.0-1-armv7h downloading...
snappy-1.2.2-2-armv7h downloading...
blosc-1.21.6-1-armv7h downloading...
libaec-1.1.4-2-armv7h downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing libpng...
installing freetype2...
Optional dependencies for freetype2
harfbuzz: Improved autohinting [pending]
installing xcb-proto...
installing xorgproto...
installing libxdmcp...
installing libxau...
installing libxcb...
installing libx11...
installing libxext...
installing libpciaccess...
installing libdrm...
Optional dependencies for libdrm
cairo: needed for modetest tool
installing libxshmfence...
installing libxxf86vm...
installing libedit...
installing llvm-libs...
installing lm_sensors...
Optional dependencies for lm_sensors
rrdtool: for logging with sensord
perl: for sensor detection and configuration convert [installed]
installing spirv-tools...
installing default-cursors...
Optional dependencies for default-cursors
adwaita-cursors: default cursor theme
installing wayland...
installing mesa...
Optional dependencies for mesa
opengl-man-pages: for the OpenGL API man pages
installing libglvnd...
installing glu...
installing glew...
Optional dependencies for glew
libx11: for glxewinfo and visualinfo [installed]
installing glm...
installing python-pyqt5-sip...
installing libjpeg-turbo...
installing xcb-util-keysyms...
installing xcb-util-renderutil...
installing fontconfig...
Creating fontconfig configuration...
Rebuilding fontconfig cache...
installing graphite...
Optional dependencies for graphite
graphite-docs: Documentation
installing harfbuzz...
Optional dependencies for harfbuzz
harfbuzz-utils: utilities
installing libice...
installing libsm...
installing libxt...
installing libxmu...
installing xorg-xset...
installing xorg-xprop...
installing xdg-utils...
Optional dependencies for xdg-utils
kde-cli-tools: for KDE Plasma5 support in xdg-open
exo: for Xfce support in xdg-open
pcmanfm: for LXDE support in xdg-open
perl-file-mimeinfo: for generic support in xdg-open
perl-net-dbus: Perl extension to dbus used in xdg-screensaver
perl-x11-protocol: Perl X11 protocol used in xdg-screensaver
installing shared-mime-info...
installing xcb-util-wm...
installing libxrender...
installing libxfixes...
installing libxi...
installing xcb-util...
installing xcb-util-image...
installing tslib...
installing mtdev...
installing libevdev...
installing libgudev...
installing libwacom...
Optional dependencies for libwacom
python-libevdev: for libwacom-show-stylus
python-pyudev: for libwacom-show-stylus
installing libinput...
Optional dependencies for libinput
gtk4: libinput debug-gui
python-pyudev: libinput measure
python-libevdev: libinput measure
python-yaml: used by various tools
installing xkeyboard-config...
installing libxkbcommon...
Optional dependencies for libxkbcommon
libxkbcommon-x11: xkbcli interactive-x11 [pending]
wayland: xkbcli interactive-wayland [installed]
installing libxkbcommon-x11...
installing duktape...
installing libproxy...
installing libdaemon...
installing avahi...
Optional dependencies for avahi
gtk3: avahi-discover, avahi-discover-standalone, bshell, bssh, bvnc
libevent: libevent bindings [installed]
nss-mdns: NSS support for mDNS
python-dbus: avahi-bookmarks, avahi-discover
python-gobject: avahi-bookmarks, avahi-discover
python-twisted: avahi-bookmarks
installing libcups...
installing double-conversion...
installing md4c...
installing qt5-translations...
installing qt5-base...
Optional dependencies for qt5-base
qt5-svg: to use SVG icon themes
qt5-wayland: to run Qt applications in a Wayland session
postgresql-libs: PostgreSQL driver
mariadb-libs: MariaDB driver
unixodbc: ODBC driver
libfbclient: Firebird/iBase driver
freetds: MS SQL driver
gtk3: GTK platform plugin
perl: for fixqt4headers and syncqt [installed]
installing python-pyqt5...
Optional dependencies for python-pyqt5
python-opengl: enable OpenGL 3D graphics in PyQt applications
python-dbus: for python-dbus mainloop support
qt5-multimedia: QtMultimedia, QtMultimediaWidgets
qt5-tools: QtHelp, QtDesigner
qt5-svg: QtSvg
qt5-xmlpatterns: QtXmlPatterns
qt5-declarative: QtQml, qmlplugin
qt5-serialport: QtSerialPort
qt5-websockets: QtWebSockets
qt5-connectivity: QtNfc, QtBluetooth
qt5-x11extras: QtX11Extras
qt5-remoteobjects: QtRemoteObjects
qt5-speech: QtTextToSpeech
qt5-quick3d: QtQuick3D
qt5-location: QtLocation, QtPositioning
qt5-sensors: QtSensors
qt5-webchannel: QtWebChannel
installing libaec...
installing hdf5...
installing snappy...
installing blosc...
installing libzip...
installing netcdf...
Optional dependencies for netcdf
netcdf-fortran: fortran bindings
netcdf-cxx: c++ bindings [pending]
installing netcdf-cxx...
installing blas...
installing cblas...
installing lapack...
installing python-numpy...
Optional dependencies for python-numpy
blas-openblas: faster linear algebra
installing tcsh...
:: Running post-transaction hooks...
(1/9) Creating system user accounts...
Creating group 'avahi' with GID 970.
Creating user 'avahi' (Avahi mDNS/DNS-SD daemon) with UID 970 and GID 970.
(2/9) Reloading system manager configuration...
Skipped: Current root is not booted.
(3/9) Updating udev hardware database...
(4/9) Reloading device manager configuration...
Skipped: Current root is not booted.
(5/9) Arming ConditionNeedsUpdate...
(6/9) Updating the MIME type database...
(7/9) Updating fontconfig configuration...
(8/9) Reloading system bus configuration...
Skipped: Current root is not booted.
(9/9) Updating fontconfig cache...
[?25h==> Checking buildtime dependencies...
==> Installing missing dependencies...
[?25lresolving dependencies...
looking for conflicting packages...
Packages (26) boost-1.88.0-3 boost-libs-1.88.0-3 cppdap-1.58.0-2
hicolor-icon-theme-0.18-1 jsoncpp-1.9.6-3 libuv-1.51.0-1
msgpack-cxx-7.0.0-1 python-autocommand-2.2.2-7
python-jaraco.collections-5.1.0-1 python-jaraco.context-6.0.1-1
python-jaraco.functools-4.1.0-1 python-jaraco.text-4.0.0-2
python-more-itertools-10.8.0-1 python-packaging-25.0-1
python-platformdirs-4.4.0-1 python-pyproject-hooks-1.2.0-3
rhash-1.4.4-1 cmake-4.1.1-1 desktop-file-utils-0.28-1
gendesk-1.0.10-1 mmtf-cpp-1.1.0-2 msgpack-c-6.1.0-2
python-build-1.3.0-1 python-installer-0.7.0-10
python-setuptools-1:80.9.0-2 python-wheel-0.45.1-1
Total Download Size: 18.78 MiB
Total Installed Size: 301.57 MiB
:: Proceed with installation? [Y/n]
:: Retrieving packages...
boost-1.88.0-3-armv7h downloading...
boost-libs-1.88.0-3-armv7h downloading...
gendesk-1.0.10-1-armv7h downloading...
msgpack-cxx-7.0.0-1-any downloading...
desktop-file-utils-0.28-1-armv7h downloading...
msgpack-c-6.1.0-2-armv7h downloading...
mmtf-cpp-1.1.0-2-any downloading...
checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
checking available disk space...
:: Processing package changes...
installing cppdap...
installing hicolor-icon-theme...
installing jsoncpp...
Optional dependencies for jsoncpp
jsoncpp-doc: documentation
installing libuv...
installing rhash...
installing cmake...
Optional dependencies for cmake
make: for unix Makefile generator [installed]
ninja: for ninja generator
qt6-base: cmake-gui
installing desktop-file-utils...
installing gendesk...
installing boost-libs...
Optional dependencies for boost-libs
openmpi: for mpi support
installing boost...
Optional dependencies for boost
python: for python bindings [installed]
installing msgpack-cxx...
installing mmtf-cpp...
installing msgpack-c...
installing python-packaging...
installing python-pyproject-hooks...
installing python-build...
Optional dependencies for python-build
python-pip: to use as the Python package installer (default)
python-uv: to use as the Python package installer
python-virtualenv: to use virtualenv for build isolation
installing python-installer...
installing python-wheel...
Optional dependencies for python-wheel
python-keyring: for wheel.signatures
python-xdg: for wheel.signatures
python-setuptools: for legacy bdist_wheel subcommand [pending]
installing python-more-itertools...
installing python-jaraco.functools...
installing python-jaraco.context...
installing python-autocommand...
installing python-jaraco.text...
Optional dependencies for python-jaraco.text
python-inflect: for show-newlines script
installing python-jaraco.collections...
installing python-platformdirs...
installing python-setuptools...
:: Running post-transaction hooks...
(1/3) Arming ConditionNeedsUpdate...
(2/3) Updating the MIME type database...
(3/3) Updating the desktop file MIME type cache...
[?25h==> Retrieving sources...
-> Found pymol-open-source-3.1.0.tar.gz
-> Found pymol.svg
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
-> Extracting pymol-open-source-3.1.0.tar.gz with bsdtar
==> Starting prepare()...
==> Starting build()...
[pymol] Generating desktop file... ok
* Getting build dependencies for wheel...
* Building wheel...
/usr/lib/python3.13/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
!!
********************************************************************************
Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
By 2026-Feb-18, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
corresp(dist, value, root_dir)
running bdist_wheel
running build
running build_py
creating build/lib.linux-armv7l-cpython-313/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-armv7l-cpython-313/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-armv7l-cpython-313/pymol2
creating build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/mass.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/gms.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/mmd.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/models.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/lst.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/mae.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/map.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/sdf.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/cif.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/cc1.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/io.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/mol.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/place.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/bonds.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/pdb.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/xyz.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/brick.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/mol2.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/protein.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/pkl.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/charge.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/cpv.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/arc.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/solvate.py -> build/lib.linux-armv7l-cpython-313/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-armv7l-cpython-313/chempy
creating build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/povray.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/selector.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/util.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/__main__.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/movie.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/headering.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/moving.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/vfont.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/gui.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/rpc.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/invocation.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/computing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/preset.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/commanding.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/selecting.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/morphing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/editing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/setting.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/checking.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/controlling.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/importing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/xray.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/exporting.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/parser.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/editor.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/internal.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/cgo.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/completing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/__init__.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/viewing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/api.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/callback.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/creating.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/keywords.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/menu.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/fitting.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/querying.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/locking.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/xwin.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/cgobuilder.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/helping.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/_gui.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/cmd.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/parsing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/externing.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/constants.py -> build/lib.linux-armv7l-cpython-313/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-armv7l-cpython-313/pymol
creating build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/scene_bin_gui.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-armv7l-cpython-313/pmg_qt
creating build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-armv7l-cpython-313/pmg_tk
creating build/lib.linux-armv7l-cpython-313/web/examples
copying modules/web/examples/justhttpd.py -> build/lib.linux-armv7l-cpython-313/web/examples
copying modules/web/examples/__init__.py -> build/lib.linux-armv7l-cpython-313/web/examples
creating build/lib.linux-armv7l-cpython-313/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy/fast
creating build/lib.linux-armv7l-cpython-313/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-armv7l-cpython-313/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-armv7l-cpython-313/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-armv7l-cpython-313/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-armv7l-cpython-313/chempy/tinker
creating build/lib.linux-armv7l-cpython-313/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-armv7l-cpython-313/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-armv7l-cpython-313/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-armv7l-cpython-313/chempy/champ
creating build/lib.linux-armv7l-cpython-313/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy/fragments
creating build/lib.linux-armv7l-cpython-313/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-armv7l-cpython-313/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy/mmtf
creating build/lib.linux-armv7l-cpython-313/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-armv7l-cpython-313/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-armv7l-cpython-313/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-armv7l-cpython-313/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-armv7l-cpython-313/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-armv7l-cpython-313/chempy/bmin
creating build/lib.linux-armv7l-cpython-313/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-armv7l-cpython-313/pymol/stereochemistry
creating build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-armv7l-cpython-313/pymol/wizard
creating build/lib.linux-armv7l-cpython-313/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-armv7l-cpython-313/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-armv7l-cpython-313/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-armv7l-cpython-313/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-armv7l-cpython-313/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-armv7l-cpython-313/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-armv7l-cpython-313/pymol/plugins
creating build/lib.linux-armv7l-cpython-313/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-armv7l-cpython-313/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-armv7l-cpython-313/pymol/Qt
creating build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
creating build/lib.linux-armv7l-cpython-313/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-armv7l-cpython-313/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-armv7l-cpython-313/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-armv7l-cpython-313/pmg_qt/syntax
creating build/lib.linux-armv7l-cpython-313/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_tk/skins
creating build/lib.linux-armv7l-cpython-313/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_tk/startup
creating build/lib.linux-armv7l-cpython-313/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_tk/skins/demo
creating build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal
running egg_info
creating modules/pymol.egg-info
writing modules/pymol.egg-info/PKG-INFO
/usr/lib/python3.13/site-packages/setuptools/_core_metadata.py:163: SetuptoolsDeprecationWarning: Invalid config.
!!
********************************************************************************
newlines are not allowed in `summary` and will break in the future
********************************************************************************
!!
write_field('Summary', single_line(summary))
writing dependency_links to modules/pymol.egg-info/dependency_links.txt
writing requirements to modules/pymol.egg-info/requires.txt
writing top-level names to modules/pymol.egg-info/top_level.txt
writing manifest file 'modules/pymol.egg-info/SOURCES.txt'
reading manifest file 'modules/pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'modules/pymol.egg-info/SOURCES.txt'
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-armv7l-cpython-313/pmg_qt/forms
running build_ext
cmake /build/pymol/src/pymol-open-source-3.1.0 -DTARGET_NAME=_cmd -DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/build/pymol/src/pymol-open-source-3.1.0/build/lib.linux-armv7l-cpython-313/pymol -DCMAKE_BUILD_TYPE=Release -DALL_INC_DIR=include;contrib/uiuc/plugins/include;ov/src;layer0;layer1;layer2;layer3;layer4;layer5;build/generated;contrib/uiuc/plugins/molfile_plugin/src;contrib/mmtf-c;/usr/lib/python3.13/site-packages/numpy/_core/include;/usr/include;/usr/include/freetype2;/usr/include/libxml2;/usr/include/python3.13;/usr/include/python3.13; -DALL_SRC=build/generated/ShaderText.cpp;contrib/mmtf-c/mmtf_parser.cpp;contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c;contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c;contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c;contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c;contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/carplugin.c;contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/corplugin.c;contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c;contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/hash.c;contrib/uiuc/plugins/molfile_plugin/src/inthash.c;contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c;contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c;contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c;contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c;contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c;contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c;contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c;contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c;layer0/Bezier.cpp;layer0/Block.cpp;layer0/CarveHelper.cpp;layer0/ContourSurf.cpp;layer0/Crystal.cpp;layer0/Err.cpp;layer0/Feedback.cpp;layer0/Field.cpp;layer0/File.cpp;layer0/GFXManager.cpp;layer0/GenericBuffer.cpp;layer0/GraphicsUtil.cpp;layer0/Isosurf.cpp;layer0/Map.cpp;layer0/Match.cpp;layer0/Matrix.cpp;layer0/MemoryDebug.cpp;layer0/MemoryUsage.cpp;layer0/MyPNG.cpp;layer0/Parse.cpp;layer0/Pixmap.cpp;layer0/PostProcess.cpp;layer0/PrintUtils.cpp;layer0/ShaderMgr.cpp;layer0/ShaderPreprocessor.cpp;layer0/ShaderPrg.cpp;layer0/Sphere.cpp;layer0/TTT.cpp;layer0/Tetsurf.cpp;layer0/Texture.cpp;layer0/Tracker.cpp;layer0/Triangle.cpp;layer0/Util.cpp;layer0/Util2.cpp;layer0/Vector.cpp;layer0/Word.cpp;layer0/ccealignmodule.cpp;layer0/marching_cubes.cpp;layer0/os_gl.cpp;layer1/Basis.cpp;layer1/ButMode.cpp;layer1/CGO.cpp;layer1/CGOGL.cpp;layer1/CGORenderer.cpp;layer1/COLLADA.cpp;layer1/Camera.cpp;layer1/Character.cpp;layer1/Color.cpp;layer1/Control.cpp;layer1/Extrude.cpp;layer1/Font.cpp;layer1/FontGLUT.cpp;layer1/FontGLUT8x13.cpp;layer1/FontGLUT9x15.cpp;layer1/FontGLUTHel10.cpp;layer1/FontGLUTHel12.cpp;layer1/FontGLUTHel18.cpp;layer1/FontType.cpp;layer1/ImageUtils.cpp;layer1/Movie.cpp;layer1/Ortho.cpp;layer1/P.cpp;layer1/PConv.cpp;layer1/Pick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-DALL_DEF=_PYMOL_LIBPNG;_PYMOL_FREETYPE;PYMOL_OPENMP;_PYMOL_VMD_PLUGINS;_HAVE_LIBXML;MMTF_MSGPACK_USE_CPP11;MSGPACK_NO_BOOST;_PYMOL_NO_MAIN;_PYMOL_NUMPY; -DALL_LIB_DIR=/usr/lib; -DALL_LIB=png;freetype;xml2;GL;GLEW;netcdf; -DALL_COMP_ARGS=-Werror=return-type;-Wunused-variable;-Wno-switch;-Wno-narrowing;-Wno-char-subscripts;-O3;-fopenmp; -DALL_EXT_LINK=-fopenmp -DSHARED_SUFFIX=.cpython-313-arm-linux-gnueabihf.so
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/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
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/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
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/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
In function 'read_car_structure_line',
inlined from 'read_car_structure' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
In file included from /usr/include/stdio.h:970,
from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function 'sprintf',
inlined from 'read_car_structure_line' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
inlined from 'read_car_structure' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp
[ 6%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
[ 6%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c
[ 7%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 7%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp
[ 8%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
[ 8%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 8%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
[ 9%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 9%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
[ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp
[ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 11%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 11%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/hash.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 12%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/inthash.c
[ 12%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 13%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
[ 13%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp
[ 13%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 14%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
[ 14%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 15%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp
[ 15%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp
[ 15%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 16%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:16: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
[ 16%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp
[ 17%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 17%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
[ 18%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:80:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parm7struct* read_parm7_header(FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
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[ 19%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o
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/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp: In function 'bool MMTF_unpack_from_file(const char*, MMTF_container*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp
[ 20%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
[ 21%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
[ 21%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
In file included from /usr/include/c++/14.2.1/map:62,
from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:58:
/usr/include/c++/14.2.1/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >]':
/usr/include/c++/14.2.1/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, {anonymous}::Blob> > >::const_iterator' changed in GCC 7.1
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483646]
In file included from /usr/include/stdio.h:970,
from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483646]
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void DDmkdir(const std::string&, mode_t, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'std::string DDreldir(const std::string&, int, int)',
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
In function 'int sprintf(char*, const char*, ...)',
inlined from 'std::string DDreldir(const std::string&, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'std::string DDreldir(const std::string&, int, int)',
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646]
In function 'int sprintf(char*, const char*, ...)',
inlined from 'std::string DDreldir(const std::string&, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 21%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c
[ 22%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp
[ 22%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 23%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
[ 23%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
[ 23%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp
[ 24%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c
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/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 25%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
[ 25%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
In file included from /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc'
[ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
[ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
[ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 27%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 27%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 28%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
[ 28%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:31: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:34: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:33: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 28%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o
[ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o
/usr/lib/distcc/bin/cc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/Bezier.cpp
[ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/Block.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Block.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Block.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Block.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/Block.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
[ 30%] Building CXX object CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o
In function 'vtf_error',
inlined from 'vtf_read_bonds' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
inlined from 'vtf_read_bonds' at /build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:20: warning: '%s' directive argument is null [-Wformat-overflow=]
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o -MF CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/CarveHelper.cpp
[ 30%] Building CXX object CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/ContourSurf.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 31%] Building CXX object CMakeFiles/_cmd.dir/layer0/Crystal.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Crystal.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Crystal.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Crystal.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/Crystal.cpp
[ 31%] Building CXX object CMakeFiles/_cmd.dir/layer0/Err.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Err.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Err.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Err.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/Err.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
[ 31%] Building CXX object CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer0/Feedback.cpp
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/ScenePicking.cpp
[ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/SceneRay.cpp
[ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/SceneRender.cpp
/build/pymol/src/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp: In function 'int ObjectMotion(pymol::CObject*, MViewAction, int, int, float, float, int, float, int, int, int, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp:193:15: warning: ignoring return value of 'constexpr const _Tp& std::max(const _Tp&, const _Tp&) [with _Tp = int]', declared with attribute 'nodiscard' [-Wunused-result]
In file included from /usr/include/c++/14.2.1/bits/stl_uninitialized.h:63,
from /usr/include/c++/14.2.1/memory:69,
from /build/pymol/src/pymol-open-source-3.1.0/layer0/os_python.h:23,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp:17:
/usr/include/c++/14.2.1/bits/stl_algobase.h:257:5: note: declared here
[ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o
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[ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/ScrollBar.cpp
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp
[ 62%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/SymOpPConv.cpp
/build/pymol/src/pymol-open-source-3.1.0/layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)':
/build/pymol/src/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:455:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from /usr/include/c++/14.2.1/bits/locale_classes.h:40,
from /usr/include/c++/14.2.1/bits/ios_base.h:41,
from /usr/include/c++/14.2.1/ios:44,
from /usr/include/c++/14.2.1/ostream:40,
from /build/pymol/src/pymol-open-source-3.1.0/include/pymol/zstring_view.h:12,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/SceneMouse.h:4,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:1:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)' at /build/pymol/src/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:454:119:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output 21 or more bytes (assuming 276) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 63%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/SymOpTools.cpp
[ 63%] Building CXX object CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/Symmetry.cpp
/build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const':
/build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:26: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
/build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.h:9,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp:7:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'std::string pymol::SymOp::to_string() const' at /build/pymol/src/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 6 and 17 bytes into a destination of size 8
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 63%] Building CXX object CMakeFiles/_cmd.dir/layer1/Text.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Text.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Text.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Text.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/Text.cpp
In file included from /usr/include/c++/14.2.1/bits/stl_algobase.h:64,
from /usr/include/c++/14.2.1/bits/specfun.h:43,
from /usr/include/c++/14.2.1/cmath:3906,
from /usr/include/c++/14.2.1/math.h:36,
from /build/pymol/src/pymol-open-source-3.1.0/layer0/os_std.h:24,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/Scene.cpp:18:
/usr/include/c++/14.2.1/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/pymol/src/pymol-open-source-3.1.0/layer1/Scene.cpp:1469:24: required from here
/usr/include/c++/14.2.1/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
[ 64%] Building CXX object CMakeFiles/_cmd.dir/layer1/TypeFace.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/TypeFace.cpp.o -MF CMakeFiles/_cmd.dir/layer1/TypeFace.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/TypeFace.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/TypeFace.cpp
[ 64%] Building CXX object CMakeFiles/_cmd.dir/layer1/View.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/View.cpp.o -MF CMakeFiles/_cmd.dir/layer1/View.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/View.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/View.cpp
[ 65%] Building CXX object CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer1/Wizard.cpp
[ 65%] Building CXX object CMakeFiles/_cmd.dir/layer2/AssemblyHelpers.cpp.o
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o -MF CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/HydrogenAdder.cpp
[ 69%] Building CXX object CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/MmodTyping.cpp
[ 70%] Building CXX object CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o
[ 70%] Building CXX object CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o -MF CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/Mol2Typing.cpp
[ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/MolV3000.cpp
[ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectAlignment.cpp
[ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp
In file included from /usr/include/c++/14.2.1/map:62,
from /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.h:13,
from /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:21:
/usr/include/c++/14.2.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]':
/usr/include/c++/14.2.1/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/14.2.1/map:63:
/usr/include/c++/14.2.1/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]':
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::map<_Key, _Tp, _Compare, _Allocator> >::operator()(const msgpack::v2::object&, std::map<_Key, _Tp, _Compare, _Allocator>&) const [with K = std::__cxx11::basic_string<char>; V = msgpack::v2::object; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/map.hpp:160:31,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1078:24,
inlined from 'typename std::enable_if<(! msgpack::v3::has_as<T>::value), T>::type msgpack::v1::object::as() const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1133:12:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/14.2.1/vector:65,
from /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:18:
/usr/include/c++/14.2.1/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*, vector<variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > > > >; _ForwardIterator = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*]':
/usr/include/c++/14.2.1/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
/usr/include/c++/14.2.1/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _ForwardIterator = std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*; bool _TrivialValueTypes = false]',
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*, vector<variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > > > >; _ForwardIterator = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*]' at /usr/include/c++/14.2.1/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*, vector<variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > > > >; _ForwardIterator = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*; _Tp = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >]' at /usr/include/c++/14.2.1/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]' at /usr/include/c++/14.2.1/bits/stl_vector.h:606:31:
/usr/include/c++/14.2.1/bits/stl_uninitialized.h:137:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::map<_Key, _Tp, _Compare, _Allocator> >::operator()(const msgpack::v2::object&, std::map<_Key, _Tp, _Compare, _Allocator>&) const [with K = std::__cxx11::basic_string<char>; V = msgpack::v2::object; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/map.hpp:160:31,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1078:24,
inlined from 'T& msgpack::v2::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v2/object_fwd.hpp:60:56,
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::vector<_Tp, _Alloc> >::operator()(const msgpack::v2::object&, std::vector<_Tp, _Alloc>&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>; Alloc = std::allocator<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/vector.hpp:60:27,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/object.hpp:1078:24:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _ForwardIterator = std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*; bool _TrivialValueTypes = false]',
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*, vector<variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > > > >; _ForwardIterator = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*]' at /usr/include/c++/14.2.1/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*, vector<variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > > > >; _ForwardIterator = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >*; _Tp = variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, __cxx11::basic_string<char, char_traits<char>, allocator<char> > >]' at /usr/include/c++/14.2.1/bits/stl_uninitialized.h:373:37,
inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]' at /usr/include/c++/14.2.1/bits/stl_vector.h:606:31,
inlined from 'std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > pymol::fixed_array_decode(std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, int, DataTypes)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:627:41,
inlined from 'void pymol::parse_bcif_decode_kind(const std::string&, const std::vector<unsigned char>&, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>&)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:693:32:
/usr/include/c++/14.2.1/bits/stl_uninitialized.h:137:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > pymol::parse_bcif_decode(const std::vector<unsigned char>&, std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >&)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:729:26:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::map<_Key, _Tp, _Compare, _Allocator> >::operator()(const msgpack::v2::object&, std::map<_Key, _Tp, _Compare, _Allocator>&) const [with K = std::__cxx11::basic_string<char>; V = msgpack::v2::object; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/map.hpp:160:31,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1078:24,
inlined from 'typename std::enable_if<(! msgpack::v3::has_as<T>::value), T>::type msgpack::v1::object::as() const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1133:12,
inlined from 'bool pymol::cif_file::parse_bcif(const char*, std::size_t)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:758:76:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::map<_Key, _Tp, _Compare, _Allocator> >::operator()(const msgpack::v2::object&, std::map<_Key, _Tp, _Compare, _Allocator>&) const [with K = std::__cxx11::basic_string<char>; V = msgpack::v2::object; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/map.hpp:160:31,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1078:24,
inlined from 'typename std::enable_if<(! msgpack::v3::has_as<T>::value), T>::type msgpack::v1::object::as() const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1133:12,
inlined from 'bool pymol::cif_file::parse_bcif(const char*, std::size_t)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:762:85:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::map<_Key, _Tp, _Compare, _Allocator> >::operator()(const msgpack::v2::object&, std::map<_Key, _Tp, _Compare, _Allocator>&) const [with K = std::__cxx11::basic_string<char>; V = msgpack::v2::object; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/map.hpp:160:31,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v1/object.hpp:1078:24,
inlined from 'T& msgpack::v2::object::convert(T&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>]' at /usr/include/msgpack/v2/object_fwd.hpp:60:56,
inlined from 'const msgpack::v2::object& msgpack::v1::adaptor::convert<std::vector<_Tp, _Alloc> >::operator()(const msgpack::v2::object&, std::vector<_Tp, _Alloc>&) const [with T = std::map<std::__cxx11::basic_string<char>, msgpack::v2::object>; Alloc = std::allocator<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/vector.hpp:60:27,
inlined from 'typename std::enable_if<(! std::is_array<_Tp>::value), const msgpack::v2::object&>::type msgpack::v1::operator>>(const msgpack::v2::object&, T&) [with T = std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/adaptor/adaptor_base.hpp:58:42,
inlined from 'typename std::enable_if<((! std::is_array<_Tp>::value) && (! std::is_pointer<_Tp>::value)), T&>::type msgpack::v1::object::convert(T&) const [with T = std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/object.hpp:1078:24,
inlined from 'typename std::enable_if<(! msgpack::v3::has_as<T>::value), T>::type msgpack::v1::object::as() const [with T = std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >]' at /usr/include/msgpack/v1/object.hpp:1133:12,
inlined from 'bool pymol::cif_file::parse_bcif(const char*, std::size_t)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/CifFile.cpp:764:105:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
[ 72%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o
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[ 76%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:508:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:507:120: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:541:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:540:121: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:333:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:332:118: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:639:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:649:122: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255
[ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:269:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:494:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:493:124: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255
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/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/RepDihedral.cpp
[ 79%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/RepDistDash.cpp
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:335:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:38,
from /build/pymol/src/pymol-open-source-3.1.0/layer0/os_python.h:34,
from /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:24:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:334:115:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 26 and 291 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 80%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/RepDistLabel.cpp
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5984:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:38,
from /build/pymol/src/pymol-open-source-3.1.0/layer0/os_python.h:34,
from /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:21:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'void ObjectMapDump(const ObjectMap*, const char*, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5983:117:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output 30 or more bytes (assuming 285) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2962:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2961:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2971:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2970:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2977:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2976:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)',
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3059:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3058:116,
inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4291:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4290:114:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4291:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4290:114:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 80%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer2/RepDot.cpp
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:80:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:38,
from /build/pymol/src/pymol-open-source-3.1.0/layer0/os_python.h:34,
from /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:20:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)' at /build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:79:113:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
[ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
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/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10623:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10622:121: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10749:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10749:21: note: directive argument in the range [-2147483647, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10749:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024
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[ 92%] Building CXX object CMakeFiles/_cmd.dir/layer3/Selector.cpp.o
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/build/pymol/src/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:941:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:38,
from /build/pymol/src/pymol-open-source-3.1.0/layer0/os_python.h:34,
from /build/pymol/src/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:21:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:940:115:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
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[ 95%] Building CXX object CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o -MF CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer5/TestPyMOL.cpp
[ 96%] Building CXX object CMakeFiles/_cmd.dir/layer5/main.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/main.cpp.o -MF CMakeFiles/_cmd.dir/layer5/main.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/main.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/layer5/main.cpp
[ 96%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/ov/src/OVContext.cpp
In file included from /usr/include/c++/14.2.1/map:62,
from /build/pymol/src/pymol-open-source-3.1.0/layer3/MoleculeExporter.cpp:8:
/usr/include/c++/14.2.1/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]':
/usr/include/c++/14.2.1/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/14.2.1/map:63:
/usr/include/c++/14.2.1/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]':
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = msgpack::v2::object; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >]',
inlined from 'void MoleculeExporterMMTF::packMsgpack()' at /build/pymol/src/pymol-open-source-3.1.0/layer3/MoleculeExporter.cpp:1594:30:
/usr/include/c++/14.2.1/bits/stl_map.h:532:37: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, msgpack::v2::object> > >::const_iterator' changed in GCC 7.1
[ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o
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[ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o
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[ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/ov/src/OVLexicon.cpp
[ 98%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o
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[ 98%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/ov/src/OVOneToOne.cpp
[ 99%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/ov/src/OVRandom.cpp
[ 99%] Building CXX object CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o
/usr/lib/distcc/bin/c++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/include -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/build/pymol/src/pymol-open-source-3.1.0/ov/src -I/build/pymol/src/pymol-open-source-3.1.0/layer0 -I/build/pymol/src/pymol-open-source-3.1.0/layer1 -I/build/pymol/src/pymol-open-source-3.1.0/layer2 -I/build/pymol/src/pymol-open-source-3.1.0/layer3 -I/build/pymol/src/pymol-open-source-3.1.0/layer4 -I/build/pymol/src/pymol-open-source-3.1.0/layer5 -I/build/pymol/src/pymol-open-source-3.1.0/build/generated -I/build/pymol/src/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/build/pymol/src/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib/python3.13/site-packages/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -Wp,-D_GLIBCXX_ASSERTIONS -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -c /build/pymol/src/pymol-open-source-3.1.0/ov/src/ov_utility.cpp
In file included from /build/pymol/src/pymol-open-source-3.1.0/layer1/Setting.h:27,
from /build/pymol/src/pymol-open-source-3.1.0/layer1/PyMOLObject.h:25,
from /build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.h:27,
from /build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:38:
/build/pymol/src/pymol-open-source-3.1.0/layer0/Result.h: In constructor 'pymol::Result<ResultT>::Result(type) [with ResultT = std::pair<float, float>]':
/build/pymol/src/pymol-open-source-3.1.0/layer0/Result.h:99:3: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11551:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11551:17: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11550:52: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11632:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11632:8: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11631:43: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11732:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11731:54: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11811:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11811:15: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11810:50: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12353:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12353:19: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12352:54: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12345:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12344:54: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12324:63: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12324:48: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12256:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12255:60: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12224:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12224:21: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12224:21: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12223:56: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12221:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12221:21: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12220:56: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12288:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12288:25: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12287:60: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12280:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12279:60: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12184:63: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12184:48: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9120:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9119:123: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5973:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5972:115: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5982:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5981:115: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5973:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5972:115: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9484:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9483:125: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9496:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9495:125: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9471:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:9470:125: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12004:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12003:62: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11915:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11915:21: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11915:21: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11914:56: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11912:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11912:21: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11911:56: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12036:25: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12036:25: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12035:60: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12029:25: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12028:60: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11871:63: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:11871:48: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12465:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12464:58: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12487:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12487:25: note: directive argument in the range [1, 2147483647]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12486:60: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12481:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:12480:60: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:15625:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:15625:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:14601:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:14600:115: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:14596:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:14595:115: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:14627:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
cc1plus: note: destination object is likely at address zero
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:2275:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:2274:125: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp: In function 'pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:3535:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:3534:113: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255
In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)',
inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5727:38:
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5097:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5096:119: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5122:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
/build/pymol/src/pymol-open-source-3.1.0/layer3/Executive.cpp:5121:117: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255
/build/pymol/src/pymol-open-source-3.1.0/layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
/build/pymol/src/pymol-open-source-3.1.0/layer3/Selector.cpp:1717:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14.2.1/cstdio:42,
from /usr/include/c++/14.2.1/ext/string_conversions.h:45,
from /usr/include/c++/14.2.1/bits/basic_string.h:4154,
from /usr/include/c++/14.2.1/string:54,
from /build/pymol/src/pymol-open-source-3.1.0/layer3/Selector.cpp:20:
In function 'int snprintf(char*, size_t, const char*, ...)',
inlined from 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)' at /build/pymol/src/pymol-open-source-3.1.0/layer3/Selector.cpp:1716:127:
/usr/include/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 59 and 324 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~
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make[2]: Entering directory '/build/pymol/src/pymol-open-source-3.1.0/build/temp.linux-armv7l-cpython-313/_champ'
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/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/chiral.c.o -MF CMakeFiles/_champ.dir/contrib/champ/chiral.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/chiral.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/chiral.c
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/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/champ.c.o -MF CMakeFiles/_champ.dir/contrib/champ/champ.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/champ.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/champ.c
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o -MF CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/champ_module.c
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/err2.c.o -MF CMakeFiles/_champ.dir/contrib/champ/err2.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/err2.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/err2.c
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o -MF CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/feedback2.c
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/list.c.o -MF CMakeFiles/_champ.dir/contrib/champ/list.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/list.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/list.c
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o -MF CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/os_memory.c
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/sort.c.o -MF CMakeFiles/_champ.dir/contrib/champ/sort.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/sort.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/sort.c
[ 81%] Building C object CMakeFiles/_champ.dir/contrib/champ/strblock.c.o
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/strblock.c.o -MF CMakeFiles/_champ.dir/contrib/champ/strblock.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/strblock.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/strblock.c
[ 90%] Building C object CMakeFiles/_champ.dir/contrib/champ/vla.c.o
/usr/lib/distcc/bin/cc -D_champ_EXPORTS -I/build/pymol/src/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.13 -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/vla.c.o -MF CMakeFiles/_champ.dir/contrib/champ/vla.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/vla.c.o -c /build/pymol/src/pymol-open-source-3.1.0/contrib/champ/vla.c
[100%] Linking C shared library /build/pymol/src/pymol-open-source-3.1.0/build/lib.linux-armv7l-cpython-313/chempy/champ/_champ.cpython-313-arm-linux-gnueabihf.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/_champ.dir/link.txt --verbose=1
/usr/lib/distcc/bin/cc -fPIC -march=armv7-a -mfloat-abi=hard -mfpu=neon -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security -fstack-clash-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/_champ.dir/link.d -shared -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-soname,_champ.cpython-313-arm-linux-gnueabihf.so -o /build/pymol/src/pymol-open-source-3.1.0/build/lib.linux-armv7l-cpython-313/chempy/champ/_champ.cpython-313-arm-linux-gnueabihf.so CMakeFiles/_champ.dir/contrib/champ/champ.c.o CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o CMakeFiles/_champ.dir/contrib/champ/chiral.c.o CMakeFiles/_champ.dir/contrib/champ/err2.c.o CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o CMakeFiles/_champ.dir/contrib/champ/list.c.o CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o CMakeFiles/_champ.dir/contrib/champ/sort.c.o CMakeFiles/_champ.dir/contrib/champ/strblock.c.o CMakeFiles/_champ.dir/contrib/champ/vla.c.o
make[2]: Leaving directory '/build/pymol/src/pymol-open-source-3.1.0/build/temp.linux-armv7l-cpython-313/_champ'
[100%] Built target _champ
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/usr/bin/cmake -E cmake_progress_start /build/pymol/src/pymol-open-source-3.1.0/build/temp.linux-armv7l-cpython-313/_champ/CMakeFiles 0
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/web
creating build/bdist.linux-armv7l/wheel/web/examples
copying build/lib.linux-armv7l-cpython-313/web/examples/justhttpd.py -> build/bdist.linux-armv7l/wheel/./web/examples
copying build/lib.linux-armv7l-cpython-313/web/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./web/examples
creating build/bdist.linux-armv7l/wheel/pymol2
copying build/lib.linux-armv7l-cpython-313/pymol2/cmd2.py -> build/bdist.linux-armv7l/wheel/./pymol2
copying build/lib.linux-armv7l-cpython-313/pymol2/__init__.py -> build/bdist.linux-armv7l/wheel/./pymol2
creating build/bdist.linux-armv7l/wheel/chempy
copying build/lib.linux-armv7l-cpython-313/chempy/mass.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/gms.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/water_amber.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/mmd.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/chempy/fast
copying build/lib.linux-armv7l-cpython-313/chempy/fast/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy/fast
copying build/lib.linux-armv7l-cpython-313/chempy/neighbor.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/bond_mmff.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/models.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/gamess1.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/chempy/tinker
copying build/lib.linux-armv7l-cpython-313/chempy/tinker/keyword.py -> build/bdist.linux-armv7l/wheel/./chempy/tinker
copying build/lib.linux-armv7l-cpython-313/chempy/tinker/realtime.py -> build/bdist.linux-armv7l/wheel/./chempy/tinker
copying build/lib.linux-armv7l-cpython-313/chempy/tinker/amber.py -> build/bdist.linux-armv7l/wheel/./chempy/tinker
copying build/lib.linux-armv7l-cpython-313/chempy/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy/tinker
copying build/lib.linux-armv7l-cpython-313/chempy/tinker/state.py -> build/bdist.linux-armv7l/wheel/./chempy/tinker
copying build/lib.linux-armv7l-cpython-313/chempy/lst.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/protein_amber.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/chempy/champ
copying build/lib.linux-armv7l-cpython-313/chempy/champ/_champ.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./chempy/champ
copying build/lib.linux-armv7l-cpython-313/chempy/champ/formal_charges.py -> build/bdist.linux-armv7l/wheel/./chempy/champ
copying build/lib.linux-armv7l-cpython-313/chempy/champ/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy/champ
copying build/lib.linux-armv7l-cpython-313/chempy/champ/amber99.py -> build/bdist.linux-armv7l/wheel/./chempy/champ
copying build/lib.linux-armv7l-cpython-313/chempy/champ/assign.py -> build/bdist.linux-armv7l/wheel/./chempy/champ
copying build/lib.linux-armv7l-cpython-313/chempy/mae.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/map.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/sdf.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/cif.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/cc1.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/bond_amber.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/io.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/dictdb.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/mol.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/place.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/bonds.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/hetatm.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/protein_residues.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/water_residues.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/chempy/fragments
copying build/lib.linux-armv7l-cpython-313/chempy/fragments/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy/fragments
copying build/lib.linux-armv7l-cpython-313/chempy/pdb.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/xyz.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/brick.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/mol2.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/protein.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/pkl.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/charge.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/chempy/mmtf
copying build/lib.linux-armv7l-cpython-313/chempy/mmtf/io.py -> build/bdist.linux-armv7l/wheel/./chempy/mmtf
copying build/lib.linux-armv7l-cpython-313/chempy/mmtf/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy/mmtf
copying build/lib.linux-armv7l-cpython-313/chempy/cpv.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/protein_amber99.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/chempy/bmin
copying build/lib.linux-armv7l-cpython-313/chempy/bmin/util.py -> build/bdist.linux-armv7l/wheel/./chempy/bmin
copying build/lib.linux-armv7l-cpython-313/chempy/bmin/realtime.py -> build/bdist.linux-armv7l/wheel/./chempy/bmin
copying build/lib.linux-armv7l-cpython-313/chempy/bmin/commands.py -> build/bdist.linux-armv7l/wheel/./chempy/bmin
copying build/lib.linux-armv7l-cpython-313/chempy/bmin/__init__.py -> build/bdist.linux-armv7l/wheel/./chempy/bmin
copying build/lib.linux-armv7l-cpython-313/chempy/bmin/state.py -> build/bdist.linux-armv7l/wheel/./chempy/bmin
copying build/lib.linux-armv7l-cpython-313/chempy/arc.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/solvate.py -> build/bdist.linux-armv7l/wheel/./chempy
copying build/lib.linux-armv7l-cpython-313/chempy/protein_mmff.py -> build/bdist.linux-armv7l/wheel/./chempy
creating build/bdist.linux-armv7l/wheel/pymol
copying build/lib.linux-armv7l-cpython-313/pymol/povray.py -> build/bdist.linux-armv7l/wheel/./pymol
creating build/bdist.linux-armv7l/wheel/pymol/stereochemistry
copying build/lib.linux-armv7l-cpython-313/pymol/stereochemistry/__init__.py -> build/bdist.linux-armv7l/wheel/./pymol/stereochemistry
copying build/lib.linux-armv7l-cpython-313/pymol/selector.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/util.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/pymolhttpd.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/__main__.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/movie.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/mpeg_encode.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/seqalign.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/headering.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/moving.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/vfont.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/gui.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/save_shortcut.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/rpc.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/invocation.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/computing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/monitoring.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/preset.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/commanding.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/feedingback.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/selecting.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/morphing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/diagnosing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/experimenting.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/editing.py -> build/bdist.linux-armv7l/wheel/./pymol
creating build/bdist.linux-armv7l/wheel/pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/cleanup.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/toggle.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/distance.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/annotation.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/appearance.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/sculpting.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/nucmutagenesis.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/benchmark.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/filter.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/renaming.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/density.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/mutagenesis.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/demo.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/command.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/pseudoatom.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/stereodemo.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/label.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/security.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/message.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/__init__.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/dragging.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/pair_fit.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/box.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/charge.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/measurement.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/wizard/openvr.py -> build/bdist.linux-armv7l/wheel/./pymol/wizard
copying build/lib.linux-armv7l-cpython-313/pymol/setting.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/shortcut.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/checking.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/controlling.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/importing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/xray.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/exporting.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/colorprinting.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/shortcut_dict.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/parser.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/editor.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/constants_palette.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/keyboard.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/shortcut_manager.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/internal.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/cgo.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/completing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/__init__.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/viewing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/api.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/callback.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/creating.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/keywords.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/menu.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/fitting.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/querying.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/locking.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/xwin.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/cgobuilder.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/helping.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/_gui.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/colorramping.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/cmd.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/lazyio.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/_cmd.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pymol
creating build/bdist.linux-armv7l/wheel/pymol/plugins
copying build/lib.linux-armv7l-cpython-313/pymol/plugins/managergui_qt.py -> build/bdist.linux-armv7l/wheel/./pymol/plugins
copying build/lib.linux-armv7l-cpython-313/pymol/plugins/installation.py -> build/bdist.linux-armv7l/wheel/./pymol/plugins
copying build/lib.linux-armv7l-cpython-313/pymol/plugins/repository.py -> build/bdist.linux-armv7l/wheel/./pymol/plugins
copying build/lib.linux-armv7l-cpython-313/pymol/plugins/legacysupport.py -> build/bdist.linux-armv7l/wheel/./pymol/plugins
copying build/lib.linux-armv7l-cpython-313/pymol/plugins/managergui.py -> build/bdist.linux-armv7l/wheel/./pymol/plugins
copying build/lib.linux-armv7l-cpython-313/pymol/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./pymol/plugins
creating build/bdist.linux-armv7l/wheel/pymol/Qt
copying build/lib.linux-armv7l-cpython-313/pymol/Qt/__init__.py -> build/bdist.linux-armv7l/wheel/./pymol/Qt
copying build/lib.linux-armv7l-cpython-313/pymol/Qt/utils.py -> build/bdist.linux-armv7l/wheel/./pymol/Qt
copying build/lib.linux-armv7l-cpython-313/pymol/parsing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/externing.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/constants.py -> build/bdist.linux-armv7l/wheel/./pymol
copying build/lib.linux-armv7l-cpython-313/pymol/wizarding.py -> build/bdist.linux-armv7l/wheel/./pymol
creating build/bdist.linux-armv7l/wheel/pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/shortcut_menu_gui.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/mimic_pmg_tk.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/pymol_gl_widget.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
creating build/bdist.linux-armv7l/wheel/pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/png.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/fetch.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/help_shortcut.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/pluginitem.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/shortcut_menu.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/save_object.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/colors.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/movieexport.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/askpartial.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/load_aln.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/load_traj.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/change_confirm.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/render.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/load_mae.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/pluginmanager.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/save_molecule.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/create_shortcut.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/props.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/load_mtz.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/forms/load_map.ui -> build/bdist.linux-armv7l/wheel/./pmg_qt/forms
copying build/lib.linux-armv7l-cpython-313/pmg_qt/TextEditor.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/pymol_qt_gui.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/scene_bin_gui.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/properties_dialog.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
creating build/bdist.linux-armv7l/wheel/pmg_qt/syntax
copying build/lib.linux-armv7l-cpython-313/pmg_qt/syntax/python.py -> build/bdist.linux-armv7l/wheel/./pmg_qt/syntax
copying build/lib.linux-armv7l-cpython-313/pmg_qt/syntax/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_qt/syntax
copying build/lib.linux-armv7l-cpython-313/pmg_qt/syntax/pmlparser.py -> build/bdist.linux-armv7l/wheel/./pmg_qt/syntax
copying build/lib.linux-armv7l-cpython-313/pmg_qt/syntax/pml.py -> build/bdist.linux-armv7l/wheel/./pmg_qt/syntax
copying build/lib.linux-armv7l-cpython-313/pmg_qt/keymapping.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/mimic_tk.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/file_dialogs.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/advanced_settings_gui.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/volume.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
copying build/lib.linux-armv7l-cpython-313/pmg_qt/builder.py -> build/bdist.linux-armv7l/wheel/./pmg_qt
creating build/bdist.linux-armv7l/wheel/pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/SetEditor.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/Demo.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/PMGApp.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
creating build/bdist.linux-armv7l/wheel/pmg_tk/skins
creating build/bdist.linux-armv7l/wheel/pmg_tk/skins/demo
copying build/lib.linux-armv7l-cpython-313/pmg_tk/skins/demo/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_tk/skins/demo
copying build/lib.linux-armv7l-cpython-313/pmg_tk/skins/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_tk/skins
creating build/bdist.linux-armv7l/wheel/pmg_tk/skins/normal
copying build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal/ModalWindow.py -> build/bdist.linux-armv7l/wheel/./pmg_tk/skins/normal
copying build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_tk/skins/normal
copying build/lib.linux-armv7l-cpython-313/pmg_tk/skins/normal/builder.py -> build/bdist.linux-armv7l/wheel/./pmg_tk/skins/normal
copying build/lib.linux-armv7l-cpython-313/pmg_tk/TextEditor.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
creating build/bdist.linux-armv7l/wheel/pmg_tk/startup
copying build/lib.linux-armv7l-cpython-313/pmg_tk/startup/__init__.py -> build/bdist.linux-armv7l/wheel/./pmg_tk/startup
copying build/lib.linux-armv7l-cpython-313/pmg_tk/volume.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/PyMOLMapLoad.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/Setting.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
copying build/lib.linux-armv7l-cpython-313/pmg_tk/ColorEditor.py -> build/bdist.linux-armv7l/wheel/./pmg_tk
running install_egg_info
Copying modules/pymol.egg-info to build/bdist.linux-armv7l/wheel/./pymol-3.1.0-py3.13.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/pymol/pymol_path
copying LICENSE -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path
copying data -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path/data
copying test -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path/test
copying examples -> build/bdist.linux-armv7l/wheel/./pymol/pymol_path/examples
creating build/bdist.linux-armv7l/wheel/pymol-3.1.0.data/scripts
creating build/bdist.linux-armv7l/wheel/pymol-3.1.0.dist-info/WHEEL
creating '/build/pymol/src/pymol-open-source-3.1.0/dist/.tmp-vhzk9n4o/pymol-3.1.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'chempy/__init__.py'
adding 'chempy/arc.py'
adding 'chempy/bond_amber.py'
adding 'chempy/bond_mmff.py'
adding 'chempy/bonds.py'
adding 'chempy/brick.py'
adding 'chempy/cc1.py'
adding 'chempy/charge.py'
adding 'chempy/cif.py'
adding 'chempy/cpv.py'
adding 'chempy/dictdb.py'
adding 'chempy/gamess1.py'
adding 'chempy/gms.py'
adding 'chempy/hetatm.py'
adding 'chempy/io.py'
adding 'chempy/lst.py'
adding 'chempy/mae.py'
adding 'chempy/map.py'
adding 'chempy/mass.py'
adding 'chempy/mmd.py'
adding 'chempy/models.py'
adding 'chempy/mol.py'
adding 'chempy/mol2.py'
adding 'chempy/neighbor.py'
adding 'chempy/pdb.py'
adding 'chempy/pkl.py'
adding 'chempy/place.py'
adding 'chempy/protein.py'
adding 'chempy/protein_amber.py'
adding 'chempy/protein_amber99.py'
adding 'chempy/protein_mmff.py'
adding 'chempy/protein_residues.py'
adding 'chempy/sdf.py'
adding 'chempy/solvate.py'
adding 'chempy/water_amber.py'
adding 'chempy/water_residues.py'
adding 'chempy/xyz.py'
adding 'chempy/bmin/__init__.py'
adding 'chempy/bmin/commands.py'
adding 'chempy/bmin/realtime.py'
adding 'chempy/bmin/state.py'
adding 'chempy/bmin/util.py'
adding 'chempy/champ/__init__.py'
adding 'chempy/champ/_champ.cpython-313-arm-linux-gnueabihf.so'
adding 'chempy/champ/amber99.py'
adding 'chempy/champ/assign.py'
adding 'chempy/champ/formal_charges.py'
adding 'chempy/fast/__init__.py'
adding 'chempy/fragments/__init__.py'
adding 'chempy/mmtf/__init__.py'
adding 'chempy/mmtf/io.py'
adding 'chempy/tinker/__init__.py'
adding 'chempy/tinker/amber.py'
adding 'chempy/tinker/keyword.py'
adding 'chempy/tinker/realtime.py'
adding 'chempy/tinker/state.py'
adding 'pmg_qt/TextEditor.py'
adding 'pmg_qt/__init__.py'
adding 'pmg_qt/advanced_settings_gui.py'
adding 'pmg_qt/builder.py'
adding 'pmg_qt/file_dialogs.py'
adding 'pmg_qt/keymapping.py'
adding 'pmg_qt/mimic_pmg_tk.py'
adding 'pmg_qt/mimic_tk.py'
adding 'pmg_qt/properties_dialog.py'
adding 'pmg_qt/pymol_gl_widget.py'
adding 'pmg_qt/pymol_qt_gui.py'
adding 'pmg_qt/scene_bin_gui.py'
adding 'pmg_qt/shortcut_menu_gui.py'
adding 'pmg_qt/volume.py'
adding 'pmg_qt/forms/__init__.py'
adding 'pmg_qt/forms/askpartial.ui'
adding 'pmg_qt/forms/change_confirm.ui'
adding 'pmg_qt/forms/colors.ui'
adding 'pmg_qt/forms/create_shortcut.ui'
adding 'pmg_qt/forms/fetch.ui'
adding 'pmg_qt/forms/help_shortcut.ui'
adding 'pmg_qt/forms/load_aln.ui'
adding 'pmg_qt/forms/load_mae.ui'
adding 'pmg_qt/forms/load_map.ui'
adding 'pmg_qt/forms/load_mtz.ui'
adding 'pmg_qt/forms/load_traj.ui'
adding 'pmg_qt/forms/movieexport.ui'
adding 'pmg_qt/forms/pluginitem.ui'
adding 'pmg_qt/forms/pluginmanager.ui'
adding 'pmg_qt/forms/png.ui'
adding 'pmg_qt/forms/props.ui'
adding 'pmg_qt/forms/render.ui'
adding 'pmg_qt/forms/save_molecule.ui'
adding 'pmg_qt/forms/save_object.ui'
adding 'pmg_qt/forms/shortcut_menu.ui'
adding 'pmg_qt/syntax/__init__.py'
adding 'pmg_qt/syntax/pml.py'
adding 'pmg_qt/syntax/pmlparser.py'
adding 'pmg_qt/syntax/python.py'
adding 'pmg_tk/ColorEditor.py'
adding 'pmg_tk/Demo.py'
adding 'pmg_tk/PMGApp.py'
adding 'pmg_tk/PyMOLMapLoad.py'
adding 'pmg_tk/SetEditor.py'
adding 'pmg_tk/Setting.py'
adding 'pmg_tk/TextEditor.py'
adding 'pmg_tk/__init__.py'
adding 'pmg_tk/volume.py'
adding 'pmg_tk/skins/__init__.py'
adding 'pmg_tk/skins/demo/__init__.py'
adding 'pmg_tk/skins/normal/ModalWindow.py'
adding 'pmg_tk/skins/normal/__init__.py'
adding 'pmg_tk/skins/normal/builder.py'
adding 'pmg_tk/startup/__init__.py'
adding 'pymol/__init__.py'
adding 'pymol/__main__.py'
adding 'pymol/_cmd.cpython-313-arm-linux-gnueabihf.so'
adding 'pymol/_gui.py'
adding 'pymol/api.py'
adding 'pymol/callback.py'
adding 'pymol/cgo.py'
adding 'pymol/cgobuilder.py'
adding 'pymol/checking.py'
adding 'pymol/cmd.py'
adding 'pymol/colorprinting.py'
adding 'pymol/colorramping.py'
adding 'pymol/commanding.py'
adding 'pymol/completing.py'
adding 'pymol/computing.py'
adding 'pymol/constants.py'
adding 'pymol/constants_palette.py'
adding 'pymol/controlling.py'
adding 'pymol/creating.py'
adding 'pymol/diagnosing.py'
adding 'pymol/editing.py'
adding 'pymol/editor.py'
adding 'pymol/experimenting.py'
adding 'pymol/exporting.py'
adding 'pymol/externing.py'
adding 'pymol/feedingback.py'
adding 'pymol/fitting.py'
adding 'pymol/gui.py'
adding 'pymol/headering.py'
adding 'pymol/helping.py'
adding 'pymol/importing.py'
adding 'pymol/internal.py'
adding 'pymol/invocation.py'
adding 'pymol/keyboard.py'
adding 'pymol/keywords.py'
adding 'pymol/lazyio.py'
adding 'pymol/locking.py'
adding 'pymol/menu.py'
adding 'pymol/monitoring.py'
adding 'pymol/morphing.py'
adding 'pymol/movie.py'
adding 'pymol/moving.py'
adding 'pymol/mpeg_encode.py'
adding 'pymol/parser.py'
adding 'pymol/parsing.py'
adding 'pymol/povray.py'
adding 'pymol/preset.py'
adding 'pymol/pymolhttpd.py'
adding 'pymol/querying.py'
adding 'pymol/rpc.py'
adding 'pymol/save_shortcut.py'
adding 'pymol/selecting.py'
adding 'pymol/selector.py'
adding 'pymol/seqalign.py'
adding 'pymol/setting.py'
adding 'pymol/shortcut.py'
adding 'pymol/shortcut_dict.py'
adding 'pymol/shortcut_manager.py'
adding 'pymol/util.py'
adding 'pymol/vfont.py'
adding 'pymol/viewing.py'
adding 'pymol/wizarding.py'
adding 'pymol/xray.py'
adding 'pymol/xwin.py'
adding 'pymol/Qt/__init__.py'
adding 'pymol/Qt/utils.py'
adding 'pymol/plugins/__init__.py'
adding 'pymol/plugins/installation.py'
adding 'pymol/plugins/legacysupport.py'
adding 'pymol/plugins/managergui.py'
adding 'pymol/plugins/managergui_qt.py'
adding 'pymol/plugins/repository.py'
adding 'pymol/pymol_path/LICENSE'
adding 'pymol/pymol_path/data/chem_comp_bond-top100.cif'
adding 'pymol/pymol_path/data/setting_help.csv'
adding 'pymol/pymol_path/data/chempy/water.pdb'
adding 'pymol/pymol_path/data/chempy/fragments/ace.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/acetylene.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ala.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/arg.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/argn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/asn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/asp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/asph.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/atp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/atpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/atpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/atp_ttpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/atp_ttpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/benzene.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/benzocycloheptane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/butane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_ala.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_arg.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_argn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_asn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_asp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_asph.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_cys.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_gln.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_glu.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_gluh.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_gly.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_hid.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_hie.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_hip.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_his.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_ile.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_leu.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_lys.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_lysn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_met.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_phe.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_pro.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_ser.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_thr.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_trp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_tyr.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ct_val.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ctp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ctpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ctpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ctp_gtpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ctp_gtpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cyanide.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cyclobutane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cycloheptane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cyclohexane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cyclopentadiene.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cyclopentane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cyclopropane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/cys.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ethylene.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/formaldehyde.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/formamide.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/formic.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gln.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/glu.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gluh.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gly.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gtp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gtpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gtpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gtp_ctpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/gtp_ctpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/hid.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/hie.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/hip.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/his.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ile.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/indane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/leu.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/lys.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/lysn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/met.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/methane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/methanol.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/napthylene.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nhh.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nitro.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nme.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_ala.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_arg.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_argn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_asn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_asp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_asph.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_cys.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_gln.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_glu.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_gluh.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_gly.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_hid.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_hie.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_hip.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_his.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_ile.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_leu.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_lys.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_lysn.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_met.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_phe.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_pro.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_ser.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_thr.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_trp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_tyr.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/nt_val.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/peptide.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/phe.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/phosphite.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/pro.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/realtime.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ser.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/sulfone.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/thr.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/trifluoromethane.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/trp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ttp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ttpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ttpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ttp_atpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/ttp_atpB.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/tyr.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/utp.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/utpA.pkl'
adding 'pymol/pymol_path/data/chempy/fragments/val.pkl'
adding 'pymol/pymol_path/data/chempy/sidechains/generate1.py'
adding 'pymol/pymol_path/data/chempy/sidechains/generate2.py'
adding 'pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.pkl'
adding 'pymol/pymol_path/data/chempy/sidechains/sc_bb_dep.py'
adding 'pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.pkl'
adding 'pymol/pymol_path/data/chempy/sidechains/sc_bb_ind.py'
adding 'pymol/pymol_path/data/chempy/sidechains/sc_library.pkl'
adding 'pymol/pymol_path/data/chempy/tinker/Makefile.delsci'
adding 'pymol/pymol_path/data/chempy/tinker/chempy.prm'
adding 'pymol/pymol_path/data/chempy/tinker/make99_simple.py'
adding 'pymol/pymol_path/data/chempy/tinker/make_simple.py'
adding 'pymol/pymol_path/data/chempy/tinker/parm94.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm94_rsm.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm96.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm96_rsm.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm99.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm99_simple.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm99_wld.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm_simple.dat'
adding 'pymol/pymol_path/data/chempy/tinker/parm_simple.inp'
adding 'pymol/pymol_path/data/demo/1hpv.r3d'
adding 'pymol/pymol_path/data/demo/1tii.pdb'
adding 'pymol/pymol_path/data/demo/cgo03.py'
adding 'pymol/pymol_path/data/demo/il2.pdb'
adding 'pymol/pymol_path/data/demo/pept.pdb'
adding 'pymol/pymol_path/data/demo/pept.pkl'
adding 'pymol/pymol_path/data/openvr/actions.json'
adding 'pymol/pymol_path/data/openvr/bindings_vive_controller.json'
adding 'pymol/pymol_path/data/openvr/hints_vive_controller.png'
adding 'pymol/pymol_path/data/openvr/hints_vive_controller.svg'
adding 'pymol/pymol_path/data/openvr/menu_splash.png'
adding 'pymol/pymol_path/data/openvr/menu_splash.svg'
adding 'pymol/pymol_path/data/pmg_qt/icons/refresh.svg'
adding 'pymol/pymol_path/data/pmg_qt/styles/pymol.sty'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro5.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro5.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro6.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro6.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro65.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro65.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro66.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro66.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro67.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/aro67.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc3.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc3.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc4.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc4.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc5.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc5.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc6.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc6.xbm'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.gif'
adding 'pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.xbm'
adding 'pymol/pymol_path/data/pymol/cmyk.png'
adding 'pymol/pymol_path/data/pymol/hsv.ppm'
adding 'pymol/pymol_path/data/pymol/splash.png'
adding 'pymol/pymol_path/data/pymol/icons/icon2.svg'
adding 'pymol/pymol_path/data/pymol/matrices/BLOSUM62'
adding 'pymol/pymol_path/data/shaders/anaglyph_header.fs'
adding 'pymol/pymol_path/data/shaders/bezier.fs'
adding 'pymol/pymol_path/data/shaders/bezier.tsc'
adding 'pymol/pymol_path/data/shaders/bezier.tse'
adding 'pymol/pymol_path/data/shaders/bezier.vs'
adding 'pymol/pymol_path/data/shaders/bg.fs'
adding 'pymol/pymol_path/data/shaders/bg.vs'
adding 'pymol/pymol_path/data/shaders/call_compute_color_for_light.fs'
adding 'pymol/pymol_path/data/shaders/compute_color_for_light.fs'
adding 'pymol/pymol_path/data/shaders/compute_fog_color.fs'
adding 'pymol/pymol_path/data/shaders/connector.fs'
adding 'pymol/pymol_path/data/shaders/connector.gs'
adding 'pymol/pymol_path/data/shaders/connector.shared'
adding 'pymol/pymol_path/data/shaders/connector.vs'
adding 'pymol/pymol_path/data/shaders/copy.fs'
adding 'pymol/pymol_path/data/shaders/copy.vs'
adding 'pymol/pymol_path/data/shaders/cylinder.fs'
adding 'pymol/pymol_path/data/shaders/cylinder.vs'
adding 'pymol/pymol_path/data/shaders/default.fs'
adding 'pymol/pymol_path/data/shaders/default.vs'
adding 'pymol/pymol_path/data/shaders/indicator.fs'
adding 'pymol/pymol_path/data/shaders/indicator.vs'
adding 'pymol/pymol_path/data/shaders/label.fs'
adding 'pymol/pymol_path/data/shaders/label.vs'
adding 'pymol/pymol_path/data/shaders/line.fs'
adding 'pymol/pymol_path/data/shaders/line.vs'
adding 'pymol/pymol_path/data/shaders/oit.fs'
adding 'pymol/pymol_path/data/shaders/oit.vs'
adding 'pymol/pymol_path/data/shaders/ramp.fs'
adding 'pymol/pymol_path/data/shaders/ramp.vs'
adding 'pymol/pymol_path/data/shaders/screen.fs'
adding 'pymol/pymol_path/data/shaders/screen.vs'
adding 'pymol/pymol_path/data/shaders/sphere.fs'
adding 'pymol/pymol_path/data/shaders/sphere.vs'
adding 'pymol/pymol_path/data/shaders/surface.fs'
adding 'pymol/pymol_path/data/shaders/surface.vs'
adding 'pymol/pymol_path/data/shaders/trilines.fs'
adding 'pymol/pymol_path/data/shaders/trilines.vs'
adding 'pymol/pymol_path/data/shaders/volume.fs'
adding 'pymol/pymol_path/data/shaders/volume.vs'
adding 'pymol/pymol_path/data/shaders/vrcontroller.fs'
adding 'pymol/pymol_path/data/shaders/vrcontroller.vs'
adding 'pymol/pymol_path/data/shaders/webgl_header.fs'
adding 'pymol/pymol_path/data/shaders/webgl_header.vs'
adding 'pymol/pymol_path/data/startup/README.txt'
adding 'pymol/pymol_path/data/startup/apbs_gui/__init__.py'
adding 'pymol/pymol_path/data/startup/apbs_gui/apbs.ui'
adding 'pymol/pymol_path/data/startup/apbs_gui/creating.py'
adding 'pymol/pymol_path/data/startup/apbs_gui/electrostatics.py'
adding 'pymol/pymol_path/data/startup/apbs_gui/qtwidgets.py'
adding 'pymol/pymol_path/data/startup/lightingsettings_gui/__init__.py'
adding 'pymol/pymol_path/data/startup/lightingsettings_gui/main.py'
adding 'pymol/pymol_path/data/test/double.png'
adding 'pymol/pymol_path/data/test/single-right.png'
adding 'pymol/pymol_path/data/test/single.png'
adding 'pymol/pymol_path/data/tut/1hpv.pdb'
adding 'pymol/pymol_path/examples/chempy/generate_amber.py'
adding 'pymol/pymol_path/examples/chempy/generate_mmff.py'
adding 'pymol/pymol_path/examples/cookbook/area_diff.pml'
adding 'pymol/pymol_path/examples/cookbook/build_peptide.py'
adding 'pymol/pymol_path/examples/cookbook/contact.pml'
adding 'pymol/pymol_path/examples/cookbook/dali.py'
adding 'pymol/pymol_path/examples/cookbook/density.pml'
adding 'pymol/pymol_path/examples/cookbook/groel_es.pml'
adding 'pymol/pymol_path/examples/cookbook/multiclip_ray.pml'
adding 'pymol/pymol_path/examples/cookbook/packing.pml'
adding 'pymol/pymol_path/examples/cookbook/packsurf.pml'
adding 'pymol/pymol_path/examples/cookbook/ref_frame.pml'
adding 'pymol/pymol_path/examples/cookbook/ribosome.pml'
adding 'pymol/pymol_path/examples/cookbook/scenes2movie.pml'
adding 'pymol/pymol_path/examples/cookbook/seq_match_sele.pml'
adding 'pymol/pymol_path/examples/cookbook/ss_xfer.pml'
adding 'pymol/pymol_path/examples/cookbook/symsph.py'
adding 'pymol/pymol_path/examples/devel/brick01.py'
adding 'pymol/pymol_path/examples/devel/cam2crd.pym'
adding 'pymol/pymol_path/examples/devel/cgo01.py'
adding 'pymol/pymol_path/examples/devel/cgo02.py'
adding 'pymol/pymol_path/examples/devel/cgo03.py'
adding 'pymol/pymol_path/examples/devel/cgo04.py'
adding 'pymol/pymol_path/examples/devel/cgo05.py'
adding 'pymol/pymol_path/examples/devel/cgo06.py'
adding 'pymol/pymol_path/examples/devel/cgo07.py'
adding 'pymol/pymol_path/examples/devel/cgo08.py'
adding 'pymol/pymol_path/examples/devel/cgo_3Dtext01.py'
adding 'pymol/pymol_path/examples/devel/cgo_axes.py'
adding 'pymol/pymol_path/examples/devel/cgo_label_hack.py'
adding 'pymol/pymol_path/examples/devel/cgo_plane.py'
adding 'pymol/pymol_path/examples/devel/chempy_model01.py'
adding 'pymol/pymol_path/examples/devel/chempy_model02.py'
adding 'pymol/pymol_path/examples/devel/chempy_model03.py'
adding 'pymol/pymol_path/examples/devel/click_ordered_list.py'
adding 'pymol/pymol_path/examples/devel/count_molecules.py'
adding 'pymol/pymol_path/examples/devel/demo.sdf'
adding 'pymol/pymol_path/examples/devel/extend_demo01.py'
adding 'pymol/pymol_path/examples/devel/gl01.py'
adding 'pymol/pymol_path/examples/devel/gl02.py'
adding 'pymol/pymol_path/examples/devel/gl03.py'
adding 'pymol/pymol_path/examples/devel/hole_vmd_tri.pym'
adding 'pymol/pymol_path/examples/devel/importing.py'
adding 'pymol/pymol_path/examples/devel/link_demo.py'
adding 'pymol/pymol_path/examples/devel/membrane.py'
adding 'pymol/pymol_path/examples/devel/mutate01.pml'
adding 'pymol/pymol_path/examples/devel/mutate02.py'
adding 'pymol/pymol_path/examples/devel/my_ext_gui.py'
adding 'pymol/pymol_path/examples/devel/particle01.py'
adding 'pymol/pymol_path/examples/devel/particle02.py'
adding 'pymol/pymol_path/examples/devel/pick_wiz.py'
adding 'pymol/pymol_path/examples/devel/povray01.py'
adding 'pymol/pymol_path/examples/devel/scenes_to_movie01.pml'
adding 'pymol/pymol_path/examples/devel/sd_annotate.pml'
adding 'pymol/pymol_path/examples/devel/sele_wiz.py'
adding 'pymol/pymol_path/examples/devel/start_pymol.py'
adding 'pymol/pymol_path/examples/devel/syncmol.py'
adding 'pymol/pymol_path/examples/devel/tkwindow.py'
adding 'pymol/pymol_path/examples/devel/webgui01.py'
adding 'pymol/pymol_path/examples/devel/webgui02.py'
adding 'pymol/pymol_path/examples/devel/xmlrpc01.py'
adding 'pymol/pymol_path/examples/devel/xmlrpc02.py'
adding 'pymol/pymol_path/examples/launching/README'
adding 'pymol/pymol_path/examples/launching/launch_demo.py'
adding 'pymol/pymol_path/examples/launching/launch_viewer1.py'
adding 'pymol/pymol_path/examples/launching/launch_viewer2.py'
adding 'pymol/pymol_path/test/dat/1tii.pdb'
adding 'pymol/pymol_path/test/dat/3al1.pdb'
adding 'pymol/pymol_path/test/dat/3al1.r3d'
adding 'pymol/pymol_path/test/dat/embed01.p1m'
adding 'pymol/pymol_path/test/dat/embed02.p1m'
adding 'pymol/pymol_path/test/dat/embed03.p1m'
adding 'pymol/pymol_path/test/dat/embed04.p1m'
adding 'pymol/pymol_path/test/dat/embed05.p1m'
adding 'pymol/pymol_path/test/dat/embed06.p1m'
adding 'pymol/pymol_path/test/dat/helix_amber.pdb'
adding 'pymol/pymol_path/test/dat/il2.pdb'
adding 'pymol/pymol_path/test/dat/ligs3d.sdf'
adding 'pymol/pymol_path/test/dat/names.pdb'
adding 'pymol/pymol_path/test/dat/odd01.pdb'
adding 'pymol/pymol_path/test/dat/odd02.pdb'
adding 'pymol/pymol_path/test/dat/pept.pdb'
adding 'pymol/pymol_path/test/dat/pept.pkl'
adding 'pymol/pymol_path/test/dat/pept.r3d'
adding 'pymol/pymol_path/test/dat/small01.mol'
adding 'pymol/pymol_path/test/dat/small02.pdb'
adding 'pymol/pymol_path/test/dat/small03.mol2'
adding 'pymol/pymol_path/test/dat/tiny.pdb'
adding 'pymol/pymol_path/test/dat/water.pdb'
adding 'pymol/stereochemistry/__init__.py'
adding 'pymol/wizard/__init__.py'
adding 'pymol/wizard/annotation.py'
adding 'pymol/wizard/appearance.py'
adding 'pymol/wizard/benchmark.py'
adding 'pymol/wizard/box.py'
adding 'pymol/wizard/charge.py'
adding 'pymol/wizard/cleanup.py'
adding 'pymol/wizard/command.py'
adding 'pymol/wizard/demo.py'
adding 'pymol/wizard/density.py'
adding 'pymol/wizard/distance.py'
adding 'pymol/wizard/dragging.py'
adding 'pymol/wizard/filter.py'
adding 'pymol/wizard/label.py'
adding 'pymol/wizard/measurement.py'
adding 'pymol/wizard/message.py'
adding 'pymol/wizard/mutagenesis.py'
adding 'pymol/wizard/nucmutagenesis.py'
adding 'pymol/wizard/openvr.py'
adding 'pymol/wizard/pair_fit.py'
adding 'pymol/wizard/pseudoatom.py'
adding 'pymol/wizard/renaming.py'
adding 'pymol/wizard/sculpting.py'
adding 'pymol/wizard/security.py'
adding 'pymol/wizard/stereodemo.py'
adding 'pymol/wizard/toggle.py'
adding 'pymol-3.1.0.data/scripts/pymol'
adding 'pymol-3.1.0.dist-info/licenses/AUTHORS'
adding 'pymol-3.1.0.dist-info/licenses/LICENSE'
adding 'pymol2/__init__.py'
adding 'pymol2/cmd2.py'
adding 'web/examples/__init__.py'
adding 'web/examples/justhttpd.py'
adding 'pymol-3.1.0.dist-info/METADATA'
adding 'pymol-3.1.0.dist-info/WHEEL'
adding 'pymol-3.1.0.dist-info/top_level.txt'
adding 'pymol-3.1.0.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built pymol-3.1.0-cp313-cp313-linux_armv7l.whl
==> Entering fakeroot environment...
==> Starting package()...
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:147: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:151: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:147: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/data/chempy/tinker/make_simple.py:151: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/webgui02.py:156: SyntaxWarning: invalid escape sequence '\='
/usr/lib/python3.13/site-packages/pymol/pymol_path/examples/devel/webgui02.py:156: SyntaxWarning: invalid escape sequence '\='
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issues...
==> WARNING: Package contains reference to $srcdir
usr/lib/python3.13/site-packages/pymol/_cmd.cpython-313-arm-linux-gnueabihf.so
==> Creating package "pymol"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: pymol 3.1.0-1 (Mon Sep 29 12:37:11 2025)
==> Cleaning up...